Job Description P76330 Confidence 98.00% Date Thu Jan 5 12:21:53 GMT 2012 Rank 18 Aligned Residues 255 % Identity 10% Template c3libA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:hypothetical sensory transduction histidine kinase; PDBTitle: crystal structure of the extracellular domain of the putative2 histidine kinase mmhk1s-z3 Resolution 2.99 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	Q	R	N	H	L	E	N	V	A	N	A	L	D	K	H	L	Q	Y	N	V	D	K	L	I	F	L	R	N	G	M	R	E	A	L	V	A	P	L	D	F	T	S	L	R	D	A	V	T	E	F	E	Q	H	R	D	E	H	A	W	K	I	E	L	N	R	R	R	T	L	P	V	N	G	V	S	D	A	L
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	A	Y	Q	Q	S	V	E	M	A	S	N	Y	A	N	Q	F	D	A	D	M	K	A	N	L	A	I	A	R	T	I	S	T	T	M	E	S	Y	E	T	A	D	R	D	E	A	.	.	.	.	.	.	.	.	.	.	.	.	L	L	I	L	E	N	L	L	R	D	N	P	H	L	L	G	T	Y	V	A	F
Template Known Secondary structure																																										S							.	.	.	.	.	.	.	.	.	.	.	.										T		T	T		S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.													.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	E	G	N	L	L	S	R	E	N	E	S	L	D	N	E	I	T	A	A	L	E	V	G	Y	L	L	R	L	A	H	N	S	S	S	M	V	E	Q	A	M	Y	V	S	R	A	G	F	Y	V	S	T	Q	P	T	L	F	T	R	N	V	P	T	R	Y	Y	G	Y	V	T	Q	P	W	F	I	G	H	S	Q
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	P	D	A	F	D	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	E	Y	T	N	S	P	A	H	D	G	T	G	R	F	V	P	Y	W	N	K	M	N	G	T	A	S	V	A	P	L	L	H	Y	D	S	S	D	Y	Y	Q	L	P	K	A
Template Known Secondary structure		S	T	T	T	T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	S	T	T			T	T										T	T	S	S							S		T	T	T	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.																											.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	N	R	H	R	A	V	R	W	F	T	S	Q	P	E	H	A	S	N	T	E	P	Q	V	T	V	S	V	P	V	D	S	N	N	Y	W	Y	G	V	L	G	M	S	I	P	V	R	T	M	Q	Q	F	L	R	N	A	I	D	K	N	L	D	G	E	Y	Q	L	Y	D	S	K	L	R	F	L	T	S	S	N
Query Conservation
Alig confidence		.	.	.	.													.	.	.																																											.
Template Conservation		.	.	.	.													.	.	.																																											.
Template Sequence		.	.	.	.	T	E	K	D	V	L	T	E	P	Y	F	Y	.	.	.	E	G	V	F	M	V	S	Y	V	S	P	I	M	K	E	G	E	F	A	G	I	G	G	V	D	V	S	L	E	Y	V	D	E	V	V	S	K	V	R	T	F	D	.	T	G	Y	A	F	M	V	S	N	S	G	V	I	L	S	H	P	T
Template Known Secondary structure		.	.	.	.			S										.	.	.	T	T													T	T																								B	T	T	.	T	B							T	T		B	B				S	S
Template Predicted Secondary structure		.	.	.	.													.	.	.																																											.
Template SS confidence
						162	.	.	.	.	.	.	.	170	.	.	.				.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320											.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.
Query Sequence		P	D	H	P	T	G	N	I	F	D	P	R	E	L	A	L	L	A	Q	A	M	E	H	D	T	R	G	.	.	.	.	.	.	.	.	.	.	G	I	R	M	D	S	R	Y	V	S	W	E	R	L	D	H	F	D	G	V	L	V	R	V	H	T	L	S	E	G	V	R	G	D
Query Conservation																													.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	K	D	W	I	G	K	K	D	L	Y	D	F	G	G	E	E	L	E	K	A	S	R	D	I	K	N	G	I	G	G	H	L	E	T	A	D	P	T	T	G	K	T	V	I	L	F	Y	E	P	V	E	T	G	D	F	A	F	V	L	V	V	P	K	E	E	M	L	A	G	V
Template Known Secondary structure			T	T	T	T	T	T		B	T	T	T	S			S											T	T										S	S	S												T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions