Job Description P76330 Confidence 97.65% Date Thu Jan 5 12:21:53 GMT 2012 Rank 19 Aligned Residues 245 % Identity 14% Template c2p7jA_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative sensory box/ggdef family protein; PDBTitle: crystal structure of the domain of putative sensory box/ggdef family2 protein from vibrio parahaemolyticus Resolution 2.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	L	E	N	V	A	N	A	L	D	K	H	L	Q	Y	N	V	D	K	L	I	F	L	R	N	G	M	R	E	A	L	V	A	P	L	D	F	T	S	L	R	D	A	V	T	E	F	E	Q	H	R	D	E	H	A	W	K	I	E	L	N	R	R	R	T	L	P	V	N	G	V	S	D	A	L	V	S	E	G
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	N	V	E	N	T	A	K	E	A	L	H	Q	L	A	Y	T	G	R	E	Y	N	N	I	Q	D	Q	I	E	T	I	S	D	L	L	G	H	S	Q	S	L	Y	D	Y	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																																						T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.				.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																																																										.	.	.
Query SS confidence																																																										.	.	.
Query Sequence		N	L	L	S	R	E	N	E	S	L	D	N	E	I	T	A	A	L	E	V	G	Y	L	L	R	L	A	H	N	S	S	S	M	V	E	Q	A	M	Y	V	S	R	A	G	F	Y	V	S	T	Q	P	T	L	F	T	R	.	.	.	N	V	P	T	R	Y	Y	G	Y	V	T	Q	P	W	F	I	G	H	S	Q	R
Query Conservation																																																										.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																															.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	E	P	S	K	A	N	L	T	I	L	E	N	X	W	S	S	V	A	R	N	Q	K	L	Y	K	Q	I	R	F	L	D	T	S	G	T	E	K	V	R	I	K	Y	D	F	K	T	S	I	A	G	P	S	L	I	L	R	D	K	S	A	R	E	Y	F	K	Y	A	Q	S	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	S																															T	T	S	B									T	T	T	T										B		T	T	S								T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.						.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.
Query SS confidence																						.	.	.	.	.
Query Sequence		E	N	R	H	R	A	V	R	W	F	T	S	Q	P	E	H	A	S	N	T	.	.	.	.	.	E	P	Q	V	T	V	S	V	P	V	D	S	N	N	Y	W	Y	G	V	L	G	M	S	I	P	V	R	T	M	Q	Q	F	L	R	N	A	I	D	K	N	L	D	G	E	Y	Q	L	Y	D	S	K	L	R	F	L
Query Conservation																						.	.	.	.	.
Alig confidence			.	.																		.	.	.	.	.																																		.	.
Template Conservation			.	.																																																								.	.
Template Sequence		D	.	.	N	E	Q	I	S	A	W	G	I	E	L	E	R	D	K	G	E	L	V	Y	P	L	S	P	S	L	R	I	L	X	P	I	S	V	N	D	V	R	Q	G	Y	L	V	L	N	V	D	I	E	Y	L	S	S	L	L	.	.	N	Y	S	P	V	R	D	F	H	I	E	L	V	K	H	K	G	F	Y	I
Template Known Secondary structure			.	.	T	T													T	T				S	S														T	T																				.	.	S			T	T	T	T								T	T	S	B
Template Predicted Secondary structure			.	.																																																								.	.
Template SS confidence
		125			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.								310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.				.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																						.	.	.	.	.	.	.																										.	.	.
Query SS confidence																						.	.	.	.	.	.	.																										.	.	.
Query Sequence		T	S	S	N	P	D	H	P	T	G	N	I	F	D	P	R	E	L	A	L	.	.	.	.	.	.	.	L	A	Q	A	M	E	H	D	T	R	G	G	I	R	M	D	S	R	Y	V	S	W	E	R	L	.	.	.	D	H	F	D	G	V	L	V	R	V	H	T	L	S	E	G
Query Conservation																						.	.	.	.	.	.	.																										.	.	.
Alig confidence																						.	.	.	.	.	.	.																										.	.	.
Template Conservation
Template Sequence		A	S	P	D	E	S	R	L	Y	G	D	I	I	P	E	R	S	Q	F	N	F	S	N	X	Y	P	D	I	W	P	R	V	V	S	E	Q	A	G	Y	S	Y	S	G	E	H	L	I	A	F	S	S	I	K	F	V	S	N	E	P	L	H	L	I	I	D	L	S	N	E	Q	L
Template Known Secondary structure				S		G	G	G	B	T	T	T	T	S	T	T		T	T		B						T	T	T						T	T								S	S											S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions