Job Description P68644 Confidence 99.08% Date Thu Jan 5 12:11:04 GMT 2012 Rank 118 Aligned Residues 221 % Identity 21% Template d1chua2 SCOP info FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain Resolution 2.20

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.																									.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	E	D	I	F	D	A	I	I	V	G	A	G	L	A	G	S	V	A	A	L	V	L	A	R	E	G	A	Q	V	L	V	I	E	R	G	N	S	A	G	A	K	N	V	T	G	G	R	L	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	S	L	E
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.
Template Sequence		L	P	E	H	S	C	D	V	L	I	I	G	S	G	A	A	G	L	S	L	A	L	R	L	A	D	Q	H	.	Q	V	I	V	L	S	K	G	P	V	T	E	F	D	E	T	D	S	I	D	S	H	V	E	D	T	L	I	A	G	A	G	I	C	D	R	H	A	V	E	F	V	A	S	N	A	R	S	C	V	Q
Template Known Secondary structure				S				S							S											T	T	T	S	.							S	S		T	T				S															T	T	T
Template Predicted Secondary structure																														.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	I	P	G	F	A	D	S	A	P	V	E	R	L	I	T	H	E	K	L	A	F	M	T	E	K	S	A	M	T	M	D	Y	C	N	G	D	E	T	S	P	S	Q	R	S	Y	S	V	L	R	S	K	F	D	A	W	L	M	E	Q	A	E	E	A	G	A	Q	L	I	T	G	I	R	V	D	N	L	V	Q
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	L	I	D	Q	G	V	L	T	T	L	V	S	K	A	L	N	H	P	N	I	R	V	L	E	R	T	N	A	V	D	L	I	V	S	D	K	I	G	L	P	G	T	R	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V
Template Known Secondary structure						T	T													T	T						S									G	G	G	T	T			S	S		B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140																																		.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	G	K	V	V	G	V	E	A	D	G	D	V	I	E	A	K	T	V	I	L	A	D	G	V	N	S	I	L	A	E	K	L	G	M	A	K	R	V	K	P	T	D	V	A	V	G	V	K	E	L	I	E	L	P	K	S	V	I	E	D	R	F	Q	L	Q	G	N	Q	G	A	A	C	L	F	A	G	S	P
Query Conservation
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	W	V	W	N	R	N	K	E	T	V	E	T	C	H	A	K	A	V	V	L	A	T	G	G	A	S	K	V	Y	Q	Y	T	T	N	P	D	I	S	S	G	D	G	I	A	M	A	W	R	A	G	C	R	V	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	T	T								S										G	G	G	S	S	S		S		G	G	G		S										T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	G	L	M	G	G	G	F	L	Y	T	N	E	N	T	L	S	L	G	L	V	C	G	L	H	H	L	H	D	A	K	K	S	V	P	Q	M	L	E	D	F	K	Q	H	P	A	V	A	P	L	I	A	G	G	K	L	V	E	Y	S	A	H	V	V	P	E	A	G	I	N	M	L	P	E	L	V	G	D	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	G	G	V	M	V	D	D	H	G	R	T	D	V	E	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T		B		S	S	B	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		297	.	.	300	.	.	.	.			.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		V	L	I	A	G	D	A	A	.	.	G	M	C	M	N	L	G	F	T	I	R	G	M	D	L	A	I	A	A	G	E	A	A	A	K	T	V	L	S	A	M	K	S	D	D	F	S	K
Query Conservation										.	.
Alig confidence										.	.
Template Conservation
Template Sequence		L	Y	A	I	G	E	V	S	Y	T	G	L	H	G	A	N	R	M	A	S	N	S	L	L	E	C	L	V	Y	G	W	S	A	A	E	D	I	T	R	R	M	H	D	I	S	T	L	P
Template Known Secondary structure						G	G	G				S	S	S	T	T	S			T	T																											B
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions