Job Description P68644 Confidence 100.00% Date Thu Jan 5 12:11:04 GMT 2012 Rank 7 Aligned Residues 349 % Identity 18% Template c3atrA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:conserved archaeal protein; PDBTitle: geranylgeranyl reductase (ggr) from sulfolobus acidocaldarius co-2 crystallized with its ligand Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		M	S	E	D	I	F	D	A	I	I	V	G	A	G	L	A	G	S	V	A	A	L	V	L	A	R	E	G	A	Q	V	L	V	I	E	R	G	N	S	A	.	G	A	K	N	V	T	G	G	R	L	Y	A	H	S	L	E	H	I	I	P	G	F	A	D	S	A	P	V	E	R	L	I	T	H	E	K	L	A	F
Query Conservation																																										.
Alig confidence																																										.																			.	.
Template Conservation																																																													.	.
Template Sequence		M	K	E	L	K	Y	D	V	L	I	I	G	G	G	F	A	G	S	S	A	A	Y	Q	L	S	R	R	G	L	K	I	L	L	V	D	S	K	P	W	N	R	I	G	D	K	P	C	G	D	A	V	S	K	A	H	F	D	K	L	.	.	G	M	P	Y	P	K	G	E	E	L	E	N	K	I	N	G	I	K	L
Template Known Secondary structure								S							S											S	S	S	S								S	S		G	G	G	T	T		S														T	.	.	T						G	G	G
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.							.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.
Query Sequence		M	T	E	K	S	A	M	T	M	D	Y	C	N	G	D	E	T	S	P	S	Q	R	S	Y	S	V	L	R	S	K	F	D	A	W	L	M	E	Q	A	E	E	A	G	A	Q	L	I	T	G	I	R	V	D	N	L	V	Q	R	D	G	K	V	V	.	.	.	.	.	.	G	V	E	A	D	G	D	V	I	E	A
Query Conservation																																																																	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.																																										.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.
Template Sequence		Y	S	P	D	M	Q	T	V	W	T	V	N	G	E	.	.	.	.	.	.	.	.	G	F	E	L	N	A	P	L	Y	N	Q	R	V	L	K	E	A	Q	D	R	G	V	E	I	W	D	L	T	T	A	M	K	P	I	F	E	D	G	Y	V	K	G	A	V	L	F	N	R	R	T	N	E	E	L	T	V	Y	S
Template Known Secondary structure				T	T	S	S									.	.	.	.	.	.	.	.																				T	T					S	S										T	T										T	T	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.									.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	V	I	L	A	D	G	V	N	S	I	L	A	E	K	L	G	M	A	K	R	V	K	P	T	D	V	A	V	G	V	K	E	L	I	E	L	P	K	S	V	I	E	D	R	F	Q	L	Q	G	N	Q	G	A	A	C	L	F	A	G	S	P	T	D	G	L	M	G	G	G	F	L	Y	T	N	E	N	T	L
Query Conservation
Alig confidence																																								.	.	.	.
Template Conservation																																								.	.	.	.
Template Sequence		K	V	V	V	E	A	T	G	Y	S	R	S	F	R	S	K	L	P	P	E	L	P	I	T	E	D	L	D	D	K	D	A	D	V	A	Y	R	E	.	.	.	.	V	L	L	T	K	E	D	I	E	D	H	D	Y	L	R	I	F	I	D	Q	E	T	S	P	G	G	Y	W	W	Y	F	P	K	G	K	N	K	V
Template Known Secondary structure		S							G	G	G		T	T	G	G	G	S		T	T	S	G	G	G					G	G	G								.	.	.	.					S	S			T	T	T	T								T	T	T	S	T	T	S									T	T
Template Predicted Secondary structure																																								.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.					.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	G	L	V	C	G	L	H	H	L	H	D	A	K	K	S	V	P	Q	M	L	E	D	F	K	Q	H	P	A	V	A	P	L	I	A	G	G	K	L	V	E	Y	S	A	H	V	V	P	E	A	G	I	N	M	L	P	E	L	V	G	D	G	V	L	I	A	G	D	A	A	G	M	C	M	N	L	G	F	T
Query Conservation
Alig confidence															.	.	.													.	.																						.	.																							.	.
Template Conservation															.	.	.													.	.																						.	.																							.	.
Template Sequence		N	V	G	L	G	I	Q	G	G	M	G	Y	P	.	.	.	S	I	H	E	Y	Y	K	K	Y	L	D	K	.	.	Y	A	P	D	V	D	K	S	K	L	L	V	K	G	G	A	L	V	P	T	R	.	.	R	P	L	Y	T	M	A	W	N	G	I	I	V	I	G	D	S	G	F	T	V	N	.	.	P	V	H
Template Known Secondary structure									S	S	S				.	.	.													.	.			T	T																	S	.	.	S			S		S			T	T					G	G	G	G	T		S		.	.	T	T	T
Template Predicted Secondary structure															.	.	.													.	.																						.	.																							.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.				240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.			.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	G	M	D	L	A	I	A	A	G	E	A	A	A	K	T	V	L	S	A	M	K	S	D	D	F	S	K	Q	K	L	A	E	Y	R	Q	H	L	E	S	G	P	L	R	D	M	R	M	Y	Q	K	L	P	A	F	L	D	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	G	K	G	S	A	M	I	S	G	Y	C	A	A	K	A	I	L	S	A	F	E	T	G	D	F	S	A	S	G	L	W	D	M	N	I	C	Y	V	N	E	Y	G	A	K	Q	A	S	L	D	I	F	R	R	F	L	Q	K
Template Known Secondary structure																										T			S	T	T	T	T	T										T															T	T
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions