Job Description P68644 Confidence 99.49% Date Thu Jan 5 12:11:04 GMT 2012 Rank 67 Aligned Residues 288 % Identity 18% Template c3ab1B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin--nadp reductase; PDBTitle: crystal structure of ferredoxin nadp+ oxidoreductase Resolution 2.39 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	F	D	A	I	I	V	G	A	G	L	A	G	S	V	A	A	L	V	L	A	R	E	G	A	Q	V	L	V	I	E	R	G	N	S	A	G	A	K	N	V	T	G	G	R	L	Y	A	H	S	L	E	H	I	I	P	G	F	A	D	S	A	P	V	E	R	L	I	T	H	E	K	L	A	F	M	T	E	K
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	M	R	D	L	T	I	I	G	G	G	P	T	G	I	F	A	A	F	Q	C	G	M	N	N	I	S	C	R	I	I	E	S	M	P	Q	L	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												S													T	T								S	S	S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	M	T	M	D	Y	C	N	G	D	E	T	S	P	S	Q	R	S	Y	S	V	L	R	S	K	F	D	A	W	L	M	E	Q	A	E	E	A	G	A	Q	L	I	T	G	I	R	V	D	N	L	V	Q	R	D	G	K	V	V	G	V	E	A	D	G	D	V	I	E	A	K	T	V	I	L	A	D	G	V	N
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	Q	L	A	A	L	Y	P	E	K	H	I	Y	D	V	A	G	F	P	E	V	P	A	I	D	L	V	E	S	L	W	A	Q	A	E	R	Y	N	P	D	V	V	L	N	E	T	V	T	K	Y	T	K	L	D	D	G	T	F	E	T	R	T	N	T	G	N	V	Y	R	S	R	A	V	L	I	A	A	G	L	G
Template Known Secondary structure		.							T	T	S					B	T	T	B	S	S															G	G	G							S										T	T	S							T	T	S													T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	L	A	E	K	L	G	M	A	K	R	V	K	P	T	D	V	A	V	G	V	K	E	L	I	E	L	P	K	S	V	I	E	D	R	F	Q	L	Q	G	N	Q	G	A	A	C	L	F	A	G	S	P	T	D	G	L	M	G	G	G	F	L	Y	T	N	E	N	T	L	S	L	G	L	V	C	G	L	H	H
Query Conservation
Alig confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	F	E	P	R	K	L	P	Q	L	G	N	I	D	H	L	T	G	S	S	V	Y	Y	A	V	K	S	V	E	D	F	K	G	K	R	V	V	I	V	G	G	G	D	S	A	L	D	W	T	V	G	L	I	K	N	A	A	S	V	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	H	R	G	H
Template Known Secondary structure									G	G	G				T	T	T	B	T	T	T			S	S		S		G	G	G	G	T	T								S	S										T	T	T	T	S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.															.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.																																																.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	H	D	A	K	K	S	V	P	Q	M	L	E	D	F	K	Q	H	P	A	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	I	A	G	G	K	L	V	E	Y
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	F	Q	G	H	G	K	T	A	H	E	V	E	R	A	R	A	N	G	T	I	D	V	Y	L	E	T	E	V	A	S	I	E	E	S	N	G	V	L	T	R	V	H	L	R	S	S	D	G	S	K	W	T	V	E	A	D	R	L	L	I	L	I	G	F	K	S	N	L	G	P	L	A	R	W	D	L	E	L	Y
Template Known Secondary structure		S		S	S		S												T	T	S	S					T										T	T										S	S	S								S						S											T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	H	V	V	P	E	A	G	I	N	M	L	P	E	L	V	G	D	G	V	L	I	A	G	D	A	A	G	M	C	M	N	L	G	F	T	I	R	G	M	D	L	A	I	A	A	G	E	A	A	A	K	T	V	L	S	A	M	K	S	D	D	F	S	K	Q	K	L	A	E	Y	R	Q	H	L	E	S	G
Query Conservation
Alig confidence												.	.	.	.																	.	.	.	.
Template Conservation												.	.	.	.																	.	.	.	.
Template Sequence		E	N	A	L	V	V	D	S	H	M	.	.	.	.	K	T	S	V	D	G	L	Y	A	A	G	D	I	A	Y	Y	.	.	.	.	P	G	K	L	K	I	I	Q	T	G	L	S	E	A	T	M	A	V	R	H	S	L	S	Y	I	K	P	G	E	K	I	R	N	V	F	S	S	V	K	M	A	K	E	K	K
Template Known Secondary structure		T	T						T	T	S	.	.	.	.	B		S	S	T	T					G	G	G				.	.	.	.	T	T				S																				S	T	T
Template Predicted Secondary structure												.	.	.	.																	.	.	.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.					.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.					.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions