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Job DescriptionP68644
Confidence98.56%DateThu Jan 5 12:11:04 GMT 2012
Rank238Aligned Residues153
% Identity21%Templatec1nhqA_
PDB info PDB header:oxidoreductase (h2o2(a))Chain: A: PDB Molecule:nadh peroxidase; PDBTitle: crystallographic analyses of nadh peroxidase cys42ala and cys42ser2 mutants: active site structure, mechanistic implications, and an3 unusual environment of arg303
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20....... ..30.........40..... ....50.........60.........70.........
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Query Sequence  AIIVGAGLAGSVAALVLARE. . GAQVLVIERGNSAGAKNV. . . . . . TGGRLYAHSLEHIIPGFADSAPVERLITHEKLAF
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Template Sequence  VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSSGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITAI
Template Known Secondary structure 
SS
TTSSSSSSSB
GGGTTSS

GGGSBS

TT
T
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   80.........90.
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Query Sequence  MTEKSAMTMDYC. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  QPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGI
Template Known Secondary structure  TTTTTTT


S






STTTT
BT

ST
TT



S
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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   92.......100.........110.........120.........130.........140.........150.........
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Query Sequence  . . . . . . . . . . . . NGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILA
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Template Sequence  EAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYE. GDGRVQKVVTDKNAYDADLVVVA
Template Known Secondary structure  TT

SSSSTTTTT

TT
S

.SSBSS

S
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   163......170.........180.........190.........200.........210........ .220.........230.........240.
 
   160.
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Query Sequence  DG
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Template Sequence  VG
Template Known Secondary structure  S
Template Predicted Secondary structure 

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   242.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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