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Job DescriptionP68644
Confidence99.46%DateThu Jan 5 12:11:04 GMT 2012
Rank72Aligned Residues306
% Identity17%Templatec1ltxR_
PDB info PDB header:transferase/protein bindingChain: R: PDB Molecule:rab escort protein 1; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40......
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Query Sequence  MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LPSD. FDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENTENSMWQEQILENEEAIP
Template Known Secondary structure 

SB.
S

STT


SSSSS
GGG

TTT






GGGGS
TT
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   5... .10.........20.........30.........40.........50.........60.........70.........80...
 
   47..50.........60.........70.........80...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEK
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Template Sequence  LSSKDKTIQHVEVFCYASQDKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAE. . FKNITRILAFREG
Template Known Secondary structure  B
SS



STT





TGGG

SS


TTSTGGGG

..TT
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   88.90.........100.........110.........120.........130.........140.........150.. .......160.....
 
   84.....90.........100........
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Query Sequence  SAMTMDYCNGDETSPSQRSYSVLRS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation       
           
       
                       
    
                         
Template Sequence  TVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIAMTSTSCT
Template Known Secondary structure 


S
SSS
TTGGG
GGGTGGGTTSBSS

TTTS




B
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   267..270.........280.........290.........300.........310.........320.........330.........340......
 
   109110.........120.........130.........140.. .......150.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVV. . . GVEADGDVIEAKT
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Template Sequence  VDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKH
Template Known Secondary structure  TTTTSSSSSSTT
TTTT
TT

TTT

TT


S
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   349350.........360.........370.........380.........390.........400.........410.........420........
 
   156...160.........170.........180.........190.........200.........210.........220........
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Query Sequence  VILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYT. . . . . . .
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Template Sequence  FIIEDSY. . . . . . . . . . . . LSENTCSRVQYRQISRAVLITDGSVLKTDADQQVSILTVPAEEPGSFAVRVIELCSSTMTC
Template Known Secondary structure  GGG............B
TTTTSS


SS
SS

SS





SSS



GGGSSS
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   429430..... ....440.........450.........460.........470.........480.........490......
 
   229230.........240.........250.........260.........270.........280.........290.........300........
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Query Sequence  NENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCM
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Template Sequence  MKGTYLVHLTCMSSKTARED. . LERVVQKLFTPYTEIEEKPRLLWALYFNMRDSSDISRDCYNDLPSNVYVCSG. . . . . .
Template Known Secondary structure 
TT

SS
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S






S

GGGSSS

TT

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   497..500.........510...... ...520.........530.........540.........550.........560........
 
   309310.........320.........330.
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Query Sequence  NLGFTIRGMDLAIAAGEAAAKTV
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Template Sequence  . . PDSGLGNDNAVKQAETLFQQI
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SSSSS
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   575....580.........590.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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