Job Description P31436 Confidence 99.97% Date Thu Jan 5 11:47:27 GMT 2012 Rank 2 Aligned Residues 366 % Identity 12% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	A	F	L	L	V	A	F	L	T	G	I	A	G	A	L	Q	T	P	T	L	S	I	F	L	A	D	E	L	K	A	R	P	I	M	V	G	F	F	F	T	G	S	A	I	M	G	I	L	V	S	Q	F	L	A	R	H	S	D	K	Q	G	D	R	K	L	L	I	L	L	C	C	L	F	G	V	L	A	C
Query Conservation
Alig confidence																										.																																														.
Template Conservation																										.																																														.
Template Sequence		L	L	M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	D	.	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	R	R	P	V	I	L	V	.	G	M	S	I	F	M	L	A	T
Template Known Secondary structure																										.			T	T	S	S	S	T	T																			T	T						T	T	S									.
Template Predicted Secondary structure																										.																																														.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	F	A	W	N	R	N	Y	F	I	L	L	S	T	G	V	L	L	S	S	F	A	S	T	A	N	P	Q	M	F	A	L	A	R	E	H	A	D	R	T	G	R	E	T	V	M	F	S	T	F	L	R	A	Q	I	S	L	A	W	V	I	G	P	P	L	A	Y	E	L	A	M	G	F	S	F	K	V	M	Y
Query Conservation
Alig confidence																																								.	.
Template Conservation																																								.	.
Template Sequence		L	V	A	V	T	T	S	S	L	T	V	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	.	.	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L	D	T	M	W	N	W	R	A	C	Y
Template Known Secondary structure																																								.	.		T	S	S			S																							S	S
Template Predicted Secondary structure																																								.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	A	A	I	A	F	V	V	C	G	L	I	V	W	L	F	L	P	S	I	Q	R	N	I	P	V	V	T	Q	P	V	E	I	L	P	S	T	H	R	K	R	D	T	R	L	L	F	V	V	C	S	M	M	W	A	A	N	N	L	Y	M	I	N	M	P	L	F	I	I	D	E	L	H	L	T	D	K	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A	F	E	A	C	S	G	V	L	M	G	A	V	L	G	L	S	S	M	T	V
Template Known Secondary structure																		S	S				S	T	T	T						T	T	T		S	T																														S		S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.				.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																																	.	.	.
Query SS confidence																																																	.	.	.
Query Sequence		G	E	M	I	G	I	A	A	G	L	E	I	P	M	M	L	I	A	G	Y	Y	M	K	R	I	G	K	R	L	L	M	L	I	A	I	V	S	G	M	C	F	Y	A	S	V	L	M	.	.	.	A	T	T	P	A	V	E	L	E	L	Q	I	L	N	A	I	F	L	G	I	L	C	G	I	G	M	L	Y	F	Q
Query Conservation																																																	.	.	.
Alig confidence																																																	.	.	.
Template Conservation
Template Sequence		S	I	L	F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L	L	A	G	L	L	M	W	I	P	D	W	F	G	V	M	N	V	W	T	L	L	V	P	A	A	L	F	F	F	G	A	G	M	L	F	P	L	A	T	S	G	A	M
Template Known Secondary structure							T														T	T	T	T																T	S	S	S	S	S																											T	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	M	P	E	K	I	G	S	A	T	T	L	Y	A	N	T	S	R	V	G	W	I	I	A	G	S	V	D	G	I	M	V	E	I	W	S	Y	H	A	L	F	W	L	A	I	G	M	L	G	I	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	P	F	P	F	L	A	G	T	A	G	A	L	V	G	G	L	Q	N	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	G	S	L	G	L	L	M	T	L	M	G	L	L	I	V	L
Template Known Secondary structure		T																									S	T	T		T																							T
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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