Return to main results Retrieve Phyre Job Id

Job DescriptionP52133
Confidence96.53%DateThu Jan 5 12:05:38 GMT 2012
Rank4Aligned Residues69
% Identity10%Templated1aoya_
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain Arginine repressor (ArgR), N-terminal DNA-binding domain
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30....... . .40.........50.........60.. .......70...
Predicted Secondary structure 











.....
.











.






Query SS confidence 




































. . . . .
.























.










Query Sequence  MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEF. . . . . G. VSVRTLRRDFRERLMYLDLEYQSG. YCRLRTAGSEM
Query Conservation 
       
 

 

  
   
     

  


  
..... .

 


 


  
     
     . 
 
       
Alig confidence 








....























.....
.























.










Template Conservation 
 

 

  .... 
  

 

    
 

 

   
   
   









 

  


    
   
 

 
   
Template Sequence  MRSSAKQEE. . . . LVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRMLTKFGAVRTRNAKMEMVYCLPAELGVP
Template Known Secondary structure 





STT....T



ST
SS

T

TTS


SS


S
Template Predicted Secondary structure 



....


























Template SS confidence 















































































   1........ 10.........20.........30.........40.........50.........60.........70......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions