Job Description P16682 Confidence 99.69% Date Thu Jan 5 11:35:27 GMT 2012 Rank 25 Aligned Residues 213 % Identity 15% Template d2hava1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Transferrin Resolution 2.70

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T
Query Conservation
Alig confidence										.	.	.								.	.	.	.	.																																																.
Template Conservation										.	.	.								.	.	.	.	.																																																.
Template Sequence		K	P	V	K	W	C	A	L	.	.	.	S	H	H	E	R	L	K	.	.	.	.	.	C	D	E	W	S	V	N	S	V	G	K	I	E	C	V	S	A	E	T	T	E	D	C	I	A	K	I	M	N	G	E	A	D	A	M	S	L	D	G	G	F	V	Y	I	A	G	K	.	C	G	L	V	P	V	L	A	E
Template Known Secondary structure										.	.	.	S							.	.	.	.	.									T	T	S							S	S											T	S																	.	T	T
Template Predicted Secondary structure										.	.	.								.	.	.	.	.																																																.
Template SS confidence
		340	.	.	.	.	.	.	.				.	.	350	.	.	.	.						.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.		.	.	.	.	.	.	.	.	410
		111	.	.	.	.								.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.																																																										.	.						.	.	.	.
Query SS confidence							.	.	.	.	.	.	.																																																										.	.						.	.	.	.
Query Sequence		V	A	A	D	G	.	.	.	.	.	.	.	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	.	.	S	D	F	K	R	.	.	.	.
Query Conservation							.	.	.	.	.	.	.																																																										.	.						.	.	.	.
Alig confidence							.	.	.	.	.	.	.																										.	.	.	.																													.	.						.	.	.	.
Template Conservation																																							.	.	.	.
Template Sequence		N	Y	N	K	S	D	N	C	E	D	T	P	E	A	G	Y	F	A	V	A	V	V	K	K	S	A	S	D	L	T	W	D	N	L	K	G	K	.	.	.	.	K	S	C	H	T	A	V	G	R	T	A	G	W	N	I	P	M	G	L	L	Y	N	K	I	N	H	C	R	F	D	E	F	F	S	E	G	C	A	P
Template Known Secondary structure				S	S	T	T	S	G	G	G														T	T	S	S	S			G	G	G		T	T		.	.	.	.					S		T	T		T	T	T	T							G	G	G	G	T		S	S		G	G	G	T	S	S					T
Template Predicted Secondary structure																																							.	.	.	.
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.					.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
																											178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.								.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	.	.	.	.	.	.	.	P	E	K	L	K	E	L	K	V	I	W	K	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																			.	.	.	.	.	.	.
Template Conservation																																											.
Template Sequence		G	S	K	K	D	S	S	L	C	K	L	C	M	G	S	G	L	N	L	C	E	P	N	N	K	E	G	Y	Y	G	Y	T	G	A	F	R	C	L	V	E	K	.	G	D	V	A	F	V	K	H	Q	T	V	P	Q	N	T	G	G	K	N	P	D	P	W	A	K	N	L	N	E	K	D	Y	E	L	L	C	L	D
Template Known Secondary structure		T	S		T	T	S	T	T	T	T	T					S	S		T	T		S	S	T	T	S	T	T													T	.		S						T	T					T	S	T	T				S					T			G	G	G						T	T
Template Predicted Secondary structure																																											.
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.		.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
																226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	R	K	P	V	E	E	Y	A	N	C	H	L	A	R	A	P	N	H	A	V	V	T	R	K	D	K	E	A	C	V	H	K	I	L	R	Q	Q	Q	H	L	F	G	S	N
Template Known Secondary structure		S					G	G	G	G	G	G	S		S	B											G	G	G																S	S	S
Template Predicted Secondary structure
Template SS confidence
		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions