Job Description P16682 Confidence 99.25% Date Thu Jan 5 11:35:27 GMT 2012 Rank 45 Aligned Residues 189 % Identity 15% Template d2d3ia2 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Transferrin Resolution 2.15

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	.	.	.	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I
Query Conservation																																																											.	.	.
Alig confidence																																														.													.	.	.
Template Conservation																																														.
Template Sequence		D	R	W	S	V	V	S	N	G	D	V	E	C	T	V	V	D	E	T	K	D	C	I	I	K	I	M	K	G	E	A	D	A	V	A	L	D	G	G	L	V	Y	T	A	.	G	V	C	G	L	V	P	V	M	A	E	R	Y	D	D	E	S	Q	C	P	A	S	Y	F	A	V	A	V	A	R	K	D	S	N	V
Template Known Secondary structure								T	T	T	S							S	S											T	S			B												.			T	T										S		G	G	G													S	S	S
Template Predicted Secondary structure																																														.
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.																																			.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	R
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.									.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.									.	.	.	.
Template Sequence		.	N	W	N	N	L	K	G	K	.	.	.	.	K	S	C	H	T	A	V	G	R	T	A	G	W	V	I	P	M	G	L	I	H	N	R	T	G	T	C	N	F	D	E	Y	F	S	E	G	C	A	P	G	S	P	P	N	S	R	L	C	Q	L	C	Q	G	S	G	G	I	P	P	E	K	C	V	A	S	S	H
Template Known Secondary structure		.		T	T	S		T	T	S	.	.	.	.					S		T	T		T	T	T	T																G	G	G	T	S	S					T	T	S		T	T	S	G	G	G	T	T					S	S	S	S			T	T		S	S	T	T
Template Predicted Secondary structure		.									.	.	.	.
Template SS confidence
			444	.	.	.	.	.	450	.					.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.								.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.															.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	.	.	.	.	.	.	.	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	G	D	P	I	V	W	R
Query Conservation																																				.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																		.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.
Template Sequence		E	K	Y	F	G	Y	T	G	A	L	R	C	L	V	E	K	.	G	D	V	A	F	I	Q	H	S	T	V	E	E	N	T	G	G	K	N	K	A	D	W	A	K	N	L	Q	M	D	D	F	E	L	L	C	T	D	G	R	R	A	N	V	M	D	Y	R	E	C	N	L	A	E	V	P	T	H	A	V	V	V	R
Template Known Secondary structure		S	T	T													T	.		S						T	T					T	S	T	T				S	T	T	T	T	T			G	G	G						T	T	S					G	G	G	G	G	G	S		S
Template Predicted Secondary structure																		.
Template SS confidence
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.		.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	L	S	E	T	T	K	D	K	I	Y	D	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	E	K	A	N	K	I	R	D	L	L	E	R	Q
Template Known Secondary structure		G	G	G
Template Predicted Secondary structure
Template SS confidence
		598	.	600	.	.	.	.	.	.	.	.	.	610	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions