Return to main results Retrieve Phyre Job Id

Job DescriptionP16682
Confidence99.25%DateThu Jan 5 11:35:27 GMT 2012
Rank45Aligned Residues189
% Identity15%Templated2d3ia2
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Transferrin
Resolution2.15

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   55....60.........70.........80.........90.........100.........110. ........120.........130.
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Query Sequence  QDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTV. . . AADGSPGYWSVLIVNKDSPI
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Template Sequence  DRWSVVSNGDVECTVVDETKDCIIKIMKGEADAVALDGGLVYTA. GVCGLVPVMAERYDDESQCPASYFAVAVARKDSNV
Template Known Secondary structure  TTTSSSTS

B
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S
GGG



SSS

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   359360.........370.........380.........390.........400.. .......410.........420.........430.......
 
   132.......140.........150.........160.........170.... ...
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Query Sequence  NNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FKR
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Template Sequence  . NWNNLKGK. . . . KSCHTAVGRTAGWVIPMGLIHNRTGTCNFDEYFSEGCAPGSPPNSRLCQLCQGSGGIPPEKCVASSH
Template Known Secondary structure  .
TTS
TTS....S
TT
TTTT



GGGTSS
TTS
TTSGGGTT



SSSS

TT
SSTT
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   444.....450. ........460.........470.........480.........490.........500.........510........
 
   178.180.........190.........200.........210. ........220....... ..230......
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Query Sequence  TVNAGHETNALAVANKQVDVATNNTENLDKLKTS. . . . . . . APEKLKELKVIWKSPL. . . . . . . . . . . . . . IPGDPIVWR
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Template Sequence  EKYFGYTGALRCLVEK. GDVAFIQHSTVEENTGGKNKADWAKNLQMDDFELLCTDGRRANVMDYRECNLAEVPTHAVVVR
Template Known Secondary structure  STT
T.
STTTSTT


STTTTT

GGG
TTS
GGGGGGS
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   519520.........530.... .....540.........550.........560.........570.........580.........590.......
 
   237..240.........250
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Query Sequence  KNLSETTKDKIYDF
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Template Sequence  PEKANKIRDLLERQ
Template Known Secondary structure  GGG
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   598.600.........610.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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