Job Description P16682 Confidence 99.33% Date Thu Jan 5 11:35:27 GMT 2012 Rank 43 Aligned Residues 193 % Identity 12% Template d1zbma1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.30

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V
Query Conservation
Alig confidence																	.	.	.										.									.
Template Conservation																	.	.	.										.									.
Template Sequence		K	I	R	V	A	H	T	P	D	A	D	D	A	F	X	.	.	.	F	Y	A	X	T	H	G	K	V	.	D	T	W	L	E	I	E	H	.	V	I	E	D	I	E	T	L	N	R	K	A	F	N	A	E	Y	E	V	T	A	I	S	A	H	A	Y	A	L	L	D	D	K	Y	R	I	L	S	A	G	A	S	V
Template Known Secondary structure									S	S							.	.	.						T	T		S	.			S						.												G	G	G	T			S										T	T	S	T	T	T					S	S
Template Predicted Secondary structure																	.	.	.										.									.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.				.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A
Query Conservation
Alig confidence						.	.	.	.	.							.	.	.	.	.															.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.							.	.	.	.	.															.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Sequence		G	D	G	Y	.	.	.	.	.	G	P	V	V	V	A	.	.	.	.	.	K	S	E	I	S	L	D	G	K	R	I	A	V	P	.	.	.	.	.	G	R	Y	T	T	A	N	L	L	L	K	L	A	V	.	.	.	.	.	.	.	.	.	E	D	F	E	P	V	E	X	P	F	D	R	I	I	Q	A	V	L
Template Known Secondary structure			S	S		.	.	.	.	.							.	.	.	.	.	S	S					T	T						S	.	.	.	.	.		T	T	S											.	.	.	.	.	.	.	.	.	S	S								G	G	G
Template Predicted Secondary structure						.	.	.	.	.							.	.	.	.	.															.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80						.	.	.	.	.	.						.	.	.	90	.	.	.	.	.	.	.	.	.	100						.	.	.	.	.	.	.	.	.	110	.	.	.	.										.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.				.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																		.	.	.
Query SS confidence																																		.	.	.
Query Sequence		N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	.	.	.	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N
Query Conservation																																		.	.	.
Alig confidence																																		.	.	.
Template Conservation
Template Sequence		D	E	E	V	D	A	G	L	L	I	H	E	G	Q	I	T	Y	A	D	Y	G	L	K	C	V	L	D	L	W	D	W	W	S	E	Q	V	K	L	P	L	P	L	G	L	N	A	I	R	R	D	L	S	V	E	V	Q	E	E	F	L	R	A	X	R	E
Template Known Secondary structure		T	T	S	S	S						S	G	G	G	G	T	G	G	G	G	T													T	T		S	S											T	T	S
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions