Job Description P16682 Confidence 90.13% Date Thu Jan 5 11:35:27 GMT 2012 Rank 144 Aligned Residues 250 % Identity 15% Template d1xvya_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.74

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.					.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																					.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	.	.	.	.	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																					.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.										.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.
Template Sequence		E	N	L	V	K	S	W	V	D	G	F	T	K	D	T	G	I	K	V	T	L	R	N	G	G	.	D	S	E	L	G	N	Q	L	V	Q	E	G	S	A	S	P	A	D	V	F	L	T	E	N	S	P	A	M	V	L	V	D	N	A	K	L	F	A	P	L	D	A	A	T	L	A	Q	V	E	P	Q	Y	R	P
Template Known Secondary structure																											.												G	G	G				S					S	S	S									T	T		B									T	T	B		G	G	G	S
Template Predicted Secondary structure																											.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
						104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure		.	.	.	.																										.	.	.	.	.
Query SS confidence		.	.	.	.																										.	.	.	.	.
Query Sequence		.	.	.	.	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	.	.	.	.	.	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D
Query Conservation		.	.	.	.																										.	.	.	.	.
Alig confidence		.	.	.	.											.	.	.	.	.	.	.	.	.							.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.
Template Sequence		S	H	G	R	W	I	G	I	A	A	R	S	T	V	.	.	.	.	.	.	.	.	.	F	V	Y	N	P	A	K	L	S	D	A	Q	L	P	K	S	L	L	D	L	A	K	P	E	W	K	G	R	W	A	A	S	P	S	G	A	D	F	Q	A	I	V	S	A	L	L	E	L	K	G	E	K	A	T	L	A	W
Template Known Secondary structure		T	T		S	S										.	.	.	.	.	.	.	.	.					T	T	T	S		G	G	G			S	S	G	G	G	G	G	S	G	G	G	T	T	S					T	T	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.										.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		175	.						.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.						.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.
Predicted Secondary structure				.	.	.	.	.																																																			.	.	.	.	.															.
Query SS confidence				.	.	.	.	.																																																			.	.	.	.	.															.
Query Sequence		F	K	.	.	.	.	.	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	.	.	.	.	.	L	I	P	G	D	P	I	V	W	R	K	N	L	S	.	E	T	T
Query Conservation				.	.	.	.	.																																																			.	.	.	.	.															.
Alig confidence				.	.	.	.	.																																																			.	.	.	.	.															.
Template Conservation
Template Sequence		L	K	A	M	K	T	N	F	T	A	Y	K	G	N	S	T	V	M	K	A	V	N	A	G	Q	V	D	S	G	V	I	Y	H	Y	Y	P	F	V	D	G	A	K	T	G	E	N	S	N	N	I	K	L	Y	Y	F	K	H	Q	D	P	G	A	F	V	S	I	S	G	G	G	V	L	A	S	S	K	H	Q	Q	Q
Template Known Secondary structure													S	S											T	S	S	S						T									T	T		T	T	T	T	T								T	T		G	G	G										B	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E	K	A	V	L	E	R	L	G	W	A	P	F	R	A	S	S	D	L	Q	L	V	P	I	R	Q	L	A	L	F	K	E	M	Q	G	V	K	S	N	K	G	L	N	E	Q	D	K	L	A	K	T	T	E
Query Conservation
Alig confidence											.	.	.	.																												.	.
Template Conservation											.	.	.	.																												.	.
Template Sequence		A	Q	A	F	I	K	W	I	T	.	.	.	.	G	K	Q	G	Q	E	I	L	R	T	N	N	A	F	E	Y	A	V	G	V	G	A	A	S	N	P	K	.	.	L	V	P	L	K	D	L	D	A	P	K	V	D	A	A	Q	L	N	S	K	K	V	V	E	L	M	T
Template Known Secondary structure											.	.	.	.	S										S	S	S			B			B	T	T					T	T	.	.	S			G	G	G	G							G	G	G
Template Predicted Secondary structure											.	.	.	.																												.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250					.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.			.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions