Job Description P16682 Confidence 98.23% Date Thu Jan 5 11:35:27 GMT 2012 Rank 101 Aligned Residues 189 % Identity 15% Template d1wdna_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.94

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N
Query Conservation
Alig confidence																					.																																										.	.	.	.	.	.	.
Template Conservation																					.																																										.	.	.	.	.	.	.
Template Sequence		L	W	A	A	I	A	K	E	L	K	L	D	Y	E	L	K	P	M	D	.	F	S	G	I	I	P	A	L	Q	T	K	N	V	D	L	A	L	A	G	I	T	I	T	D	E	R	K	K	A	I	D	F	S	D	G	Y	Y	K	S	G	L	.	.	.	.	.	.	.	L	V	M	V	K	A	N	N	N	D	V	K
Template Known Secondary structure											T										.	G	G	G							T	T	S	S	S														T	T	S				S								.	.	.	.	.	.	.						T	T			S		S
Template Predicted Secondary structure																					.																																										.	.	.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90								.	.	.	.	.	.	.	.	.	100	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A
Query Conservation
Alig confidence										.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Sequence		S	V	K	D	L	D	G	K	.	.	.	.	V	V	A	V	K	S	G	T	G	S	V	D	Y	A	K	A	N	.	.	.	.	.	.	.	.	.	.	I	K	T	K	D	L	R	Q	F	P	N	I	D	N	A	Y	M	E	L	G	T	N	R	A	D	A	V	L	H	D	T	P	N	I	L	Y	F	I	K	T	A
Template Known Secondary structure		S	S	T	T	T	T	T		.	.	.	.						T	T	S										.	.	.	.	.	.	.	.	.	.				S						S	S										T	T	S		S															T	T
Template Predicted Secondary structure										.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110					.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.											.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E	K	A	V	L	E	R
Query Conservation
Alig confidence			.	.																								.
Template Conservation			.	.																								.
Template Sequence		G	.	.	N	G	Q	F	K	A	V	G	D	S	L	E	A	Q	Q	Y	G	I	A	F	P	K	G	.	S	D	E	L	R	D	K	V	N	G	A	L	K	T	L	R	E	N	G	T	Y	N	E	I	Y	K	K
Template Known Secondary structure		T	.	.	T	T	T																			T	T	.																		T	S
Template Predicted Secondary structure			.	.																								.
Template SS confidence
		169			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions