Job Description P16682 Confidence 99.63% Date Thu Jan 5 11:35:27 GMT 2012 Rank 27 Aligned Residues 206 % Identity 17% Template d1us5a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.5

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																		.																																												.	.	.	.
Query SS confidence																																		.																																												.	.	.	.
Query Sequence		Q	E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	.	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	.	.	.	.
Query Conservation																																		.																																												.	.	.	.
Alig confidence										.	.																							.																																												.	.	.	.
Template Conservation										.	.
Template Sequence		A	Q	E	F	I	T	I	G	.	.	S	G	S	T	T	G	V	Y	F	P	V	A	T	G	I	A	K	L	V	N	D	A	N	V	G	I	R	A	N	A	R	S	T	G	G	S	V	A	N	I	N	A	I	N	A	G	E	F	E	M	A	L	A	Q	N	D	I	A	Y	Y	A	Y	Q	G	C	C	I	P	A	F
Template Known Secondary structure										.	.				T	T	S	S																T	S	S									S											T	T	S		S															T		S	S	T	T	T
Template Predicted Secondary structure										.	.
Template SS confidence
		17	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
									104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.												.	.	.	.	.	.																					.	.	.	.																			.	.
Template Conservation																				.	.	.	.	.	.																					.	.	.	.																			.	.
Template Sequence		E	G	K	P	V	K	T	I	R	A	L	A	A	L	Y	P	E	V	.	.	.	.	.	.	V	H	V	V	A	R	K	D	A	G	I	R	T	V	A	D	L	K	G	K	.	.	.	.	R	V	V	V	G	D	V	G	S	G	T	E	Q	N	A	R	Q	I	.	.	L	E	A	Y	G	L	T	F	D	D	L	G
Template Known Secondary structure		T	T				T	T												.	.	.	.	.	.							T	T	S	S		S	S	G	G	G	G	T	T	S	.	.	.	.							T	T											.	.				T	T			G	G	G	S	S
Template Predicted Secondary structure																				.	.	.	.	.	.																					.	.	.	.																			.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.							.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	.	.	.	.	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.													.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.
Template Sequence		Q	A	I	R	V	S	A	S	Q	G	I	Q	L	M	Q	D	K	R	A	D	A	L	F	Y	T	V	G	L	G	A	S	A	I	Q	Q	L	A	L	T	T	P	.	.	.	.	.	I	A	L	V	A	V	D	L	N	R	I	Q	A	I	A	K	K	Y	P	F	Y	V	G	F	N	I	P	G	G	T	Y	K	G	V
Template Known Secondary structure																	T	T	S		S								T	T											S		.	.	.	.	.													T	T	T	T	T		T	T								T	T	S	B	T	T	B
Template Predicted Secondary structure																																											.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.						.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
								227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	T	T	P	T	V	A	V	Q	A	M	L	I	A	S	E	R	L	S	E	E	T	V	Y	K	F	M	K	A	V	F	G
Template Known Secondary structure			S															T	T	S														S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions