Job Description P16682 Confidence 99.57% Date Thu Jan 5 11:35:27 GMT 2012 Rank 32 Aligned Residues 201 % Identity 16% Template d1tfda_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Transferrin Resolution 2.30

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		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.
Predicted Secondary structure																																																						.																		.	.	.
Query SS confidence																																																						.																		.	.	.
Query Sequence		P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	.	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	.	.	.	P	G	Y	W	S	V	L
Query Conservation																																																						.																		.	.	.
Alig confidence																																																						.																		.	.	.
Template Conservation
Template Sequence		A	N	F	R	D	S	M	K	K	V	L	P	E	D	G	P	R	I	I	C	V	K	K	A	S	Y	L	D	C	I	K	A	I	A	A	H	E	A	D	A	V	T	L	D	A	G	L	V	H	E	A	G	L	T	P	N	N	L	K	P	V	V	A	E	F	Y	G	S	K	E	N	P	K	T	F	Y	Y	A	V	A
Template Known Secondary structure									T	T	T	S		S	S	S									S	S										T	T	S			B													T	T	T	T											S		S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.									.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	.	.	.	.	.	.	.	.	S	D	F	K	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																			.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.									.	.	.	.																													.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.									.	.	.	.
Template Sequence		L	V	K	K	G	S	N	F	.	Q	L	N	E	L	Q	G	K	.	.	.	.	K	S	C	H	T	G	L	G	R	S	A	G	W	N	I	P	I	G	L	L	Y	C	D	L	P	E	P	R	K	P	L	E	K	A	V	A	S	F	F	S	G	S	C	V	P	C	A	D	Q	L	C	Q	L	C	P	G	C	G	C
Template Known Secondary structure					T	T				.		T	T			T	T		.	.	.	.					S		T	T		T	T	T	T								T	T	T	S		S			S	S							T	T	S	S	S				T	T					B	S	S	S	T	T			S
Template Predicted Secondary structure										.									.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
						179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.															.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure		.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S
Query Conservation		.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																															.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.
Template Sequence		S	S	S	Q	P	Y	F	G	Y	S	G	A	F	K	C	L	K	D	G	L	G	D	V	A	F	V	K	Q	E	T	I	F	E	N	.	L	P	S	K	D	E	R	D	Q	Y	E	L	L	C	L	D	N	T	R	K	P	V	D	E	Y	E	Q	C	H	L	A	R	V	P	S	H	A	V	V	A	R	S	V	D	G
Template Known Secondary structure		S	S		S	S	S	S	S									T	T	T	S	S	S						T	T						.								T	T						T	T	T					T	T		T	T	T	S		S												S	S	S
Template Predicted Secondary structure																																				.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K
Query Conservation
Alig confidence				.	.
Template Conservation				.	.
Template Sequence		K	E	.	.	D	L	I	W	E	L	L	N	Q	A	Q	E
Template Known Secondary structure				.	.										T	T	T
Template Predicted Secondary structure				.	.
Template SS confidence
		259	260			.	.	.	.	.	.	.	.	.	270	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions