Job Description P16682 Confidence 99.79% Date Thu Jan 5 11:35:27 GMT 2012 Rank 15 Aligned Residues 215 % Identity 15% Template d1ryoa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Transferrin Resolution 1.20

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	.	D	R	A	N	G	Q	V	F	A	Q
Query Conservation																																																																							.
Alig confidence																		.																																																					.
Template Conservation																		.
Template Sequence		K	T	V	R	W	C	A	V	S	E	H	E	A	T	K	C	.	Q	S	F	R	D	H	M	K	S	V	I	P	S	D	G	P	S	V	A	C	V	K	K	A	S	Y	L	D	C	I	R	A	I	A	A	N	E	A	D	A	V	T	L	D	A	G	L	V	Y	D	A	Y	L	A	P	N	N	L	K	P	V	V	A
Template Known Secondary structure																		.											S		T	T	S									S	S										T	T	S			B													S	T	T	T
Template Predicted Secondary structure																		.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.																																																																.	.	.	.	.	.	.
Query SS confidence									.	.	.																																																																.	.	.	.	.	.	.
Query Sequence		T	V	A	A	D	G	S	.	.	.	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	.	.	.	.	.	.	.
Query Conservation									.	.	.																																																																.	.	.	.	.	.	.
Alig confidence									.	.	.																.									.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation																											.									.	.	.	.
Template Sequence		E	F	Y	G	S	K	E	D	P	Q	T	F	Y	Y	A	V	A	V	V	K	K	D	S	G	F	.	Q	M	N	Q	L	R	G	K	.	.	.	.	K	S	C	H	T	G	L	G	R	S	A	G	W	N	I	P	I	G	L	L	Y	C	D	L	P	E	P	R	K	P	L	E	K	A	V	A	N	F	F	S	G	S
Template Known Secondary structure							S	S	S			S										T	T				.		G	G	G		T	T		.	.	.	.					S		T	T		T	T	T	T								G	G	G	S		S				S									S	S	S
Template Predicted Secondary structure																											.									.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
																													180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.																		.	.	.	.	.
Template Conservation																																																											.
Template Sequence		C	A	P	C	A	D	G	T	D	F	P	Q	L	C	Q	L	C	P	G	C	G	C	S	T	L	N	Q	Y	F	G	Y	S	G	A	F	K	C	L	K	D	G	A	G	D	V	A	F	V	K	H	S	T	I	F	E	N	L	.	A	N	K	A	D	R	D	Q	Y	E	L	L	C	L	D	N	T	R	K	P	V	D
Template Known Secondary structure				T	T	S		T	T	T		G	G	G	G	T	T	S	T	T			S	S	T	T	S	T	T												T	T	S		S						T	T							.		S					T	T						T	T	S					G	G
Template Predicted Secondary structure																																																											.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
											228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																.	.
Template Conservation																										.	.
Template Sequence		E	Y	K	D	C	H	L	A	Q	V	P	S	H	T	V	V	A	R	S	M	G	G	K	E	.	.	D	L	I	W	E	L	L	N	Q	A
Template Known Secondary structure		G	G	G	G	S		S												S	S	S				.	.
Template Predicted Secondary structure																										.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260			.	.	.	.	.	.	.	.	.	270

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions