Return to main results Retrieve Phyre Job Id

Job DescriptionP16682
Confidence85.64%DateThu Jan 5 11:35:27 GMT 2012
Rank150Aligned Residues189
% Identity15%Templated1pdaa1
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.76

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.........70.... .....80.........90.........
Predicted Secondary structure 













..........




Query SS confidence 












































. . . . . . . . . .
























Query Sequence  EKALNFGIISTESQQNLKPQWTPFLQDMEKKLGVKVNAFFAPDYA. . . . . . . . . . GIIQGMRFNKVDIAWYGNLSAMEAV
Query Conservation     
 


 
            

   
   

  
      
  ..........   


  
 



   
  
  
 
Alig confidence 







..


































..........



















.



Template Conservation     




..
 
 


 

  
   
    
    


 
 
 

  


 





 


 
 









.

  
Template Sequence  DNVLRIAT. . RQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVIGKGLFVKELEVALLENRADIAVHSMKD. VPVE
Template Known Secondary structure 

..

S
TT







TTTTTS
SGGG.S
S
Template Predicted Secondary structure 

..





















.



Template SS confidence 















































































   3......10 .........20.........30.........40.........50.........60.........70..... ....
 
   100.........110.........120.........130....... ..140.........150.........160.........170........
Predicted Secondary structure 
















.

















Query SS confidence 





































.








































Query Sequence  DRANGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDL. LAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRT
Query Conservation                 
   
 
 


  

 
 

 

. 

      
     
 

 
 
   
             
Alig confidence 















....








...





.






...........













....




Template Conservation     

 
 

  
 

....




    ...  
  

 

 


...........

 

 


    
....

   
Template Sequence  FPQGLGLVTICEREDP. . . . RDAFVSNNY. . . DSLDALPAGSIVGT. . . . . . . . . . . SSLRRQCQLAERRP. . . . DLIIR
Template Known Secondary structure 

TT





....

SS
...SSTTTS
TT

...........


T....TS
Template Predicted Secondary structure 










....



...







...........



....

Template SS confidence 















































































   8990.........100.... .....110... ......120....... ..130.........140. .....
 
   179180 .........190.........200.........210.........220.........230. ........240........
Predicted Secondary structure 
.



















.....



Query SS confidence 

.


















































. . . . .
















Query Sequence  VN. AGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGD. . . . . PIVWRKNLSETTKDKIY
Query Conservation    .        

  
 



                    



  
  

  .....    
  
       
 
Alig confidence 

.

































....












.....






.








Template Conservation   




 


 

  
  





 


 



    ....   
      

 







 
  .
      
 
Template Sequence  SLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRI. . . . RAALPPEISLPAVGQGAVGIECRLD. DSRTRELLA
Template Known Secondary structure 


S
TTS
STT
GGG
....S

TTTS


TTTT
TT.
T
Template Predicted Secondary structure 














....










.
Template SS confidence 











































































   147..150.........160.........170.........180... ......190.........200........ .210.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions