Job Description P16682 Confidence 99.57% Date Thu Jan 5 11:35:27 GMT 2012 Rank 34 Aligned Residues 235 % Identity 14% Template d1p99a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.70

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A
Query Conservation
Alig confidence												.	.	.	.	.														.
Template Conservation												.	.	.	.	.														.
Template Sequence		V	T	I	G	V	A	S	N	D	T	.	.	.	.	.	K	A	W	E	K	V	K	E	L	A	K	K	D	.	D	I	D	V	E	I	K	H	F	S	D	Y	N	L	P	N	K	A	L	N	D	G	D	I	D	M	N	A	F	Q	H	F	A	F	L	D	Q	Y	K	K	A	H	K	G	T	K	I	S	A	L	S
Template Known Secondary structure							S	S	S			.	.	.	.	.											G	G	G	.	T									S	S	T	T	S							T	T	S	S	S																		T	T
Template Predicted Secondary structure												.	.	.	.	.														.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50						.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.															.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	T
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.											.	.											.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.											.	.											.	.	.	.	.	.
Template Sequence		T	T	V	L	A	P	L	G	.	.	I	Y	S	D	K	I	K	D	V	K	.	.	K	V	K	D	G	A	K	V	V	I	.	.	.	.	.	.	P	N	D	V	S	N	Q	A	R	A	L	K	L	L	E	A	A	G	L	I	K	L	K	K	D	F	G	L	A	G	T	V	K	D	I	T	S	N	P	K	H	L
Template Known Secondary structure										.	.				S	S		S		G	G	.	.	G			T	T						.	.	.	.	.	.			S														T	T	S					T	T			T	T			G	G	G					T	T
Template Predicted Secondary structure										.	.											.	.											.	.	.	.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.							.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P
Query Conservation
Alig confidence																																																															.																.
Template Conservation																																																															.																.
Template Sequence		K	I	T	A	V	D	A	Q	Q	T	A	R	A	L	S	D	V	D	I	A	V	I	N	N	G	V	A	T	K	A	G	K	D	P	K	N	D	P	I	F	L	E	K	S	N	S	D	A	V	K	P	Y	I	N	I	V	A	V	N	D	K	.	D	L	D	N	K	T	Y	A	K	I	V	E	L	Y	H	.	S	K
Template Known Secondary structure								G	G	G	T	T	G	G	G	G	T	S	S												T	T			T	T	T	S		S						S	S	G	G	G	G	G	G								G	G	.	G	T	T													.	S
Template Predicted Secondary structure																																																															.																.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		E	E	K	A	V	L	E	R	L	G	W	A	P	F	R	A	S	S	.	.	D	L	Q	L	V	P	I	R	Q
Query Conservation																				.	.
Alig confidence																				.	.
Template Conservation
Template Sequence		E	A	Q	K	A	L	Q	E	D	V	K	D	G	E	K	P	V	N	L	S	K	D	E	I	K	A	I	E	T
Template Known Secondary structure												T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions