Return to main results Retrieve Phyre Job Id

Job DescriptionP16682
Confidence82.93%DateThu Jan 5 11:35:27 GMT 2012
Rank154Aligned Residues213
% Identity14%Templated1nnfa_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.10

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   47..50.........60.........70.........80 .........90.........100....
Predicted Secondary structure 






....







..................
Query SS confidence 

































. . . .























. . . . . . . . . . . . . . . . . .
Query Sequence  KPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQGM. . . . RFNKVDIAWYGNLSAMEAVDRANG. . . . . . . . . . . . . . . . . .
Query Conservation       

   
   

  
      
     


....  
 



   
  
  
      ..................
Alig confidence 

























.






....























..................
Template Conservation        
   

   

 
       .     

         

                                   
Template Sequence  KEAATAVAKAFEQETGIKVTLNSGKS. EQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPISEQTIQQTAQKGVP
Template Known Secondary structure  S




.GGG


SS
GGGTT
B



TT

TT

Template Predicted Secondary structure 





.





















Template SS confidence 















































































   10.........20.........30..... ....40.........50.........60.........70.........80........
 
   105....110.........120........ .130.........140.........150.........160.........170..
Predicted Secondary structure  .......








.....





















Query SS confidence  . . . . . . .























. . . . .











































Query Sequence  . . . . . . . QVFAQTVAADGSPGYWSVLIVNKD. . . . . SPINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISA
Query Conservation  .......          
   
 
 


  
.....
 
 

 

 

      
     
 

 
 
   
        
Alig confidence  .......








.........





.....











































Template Conservation       
  
       .........  



                    
                      
     
Template Sequence  LAPKKDWIALSGRSRV. . . . . . . . . VVYDHTKLSEKDMEKSVLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVAL
Template Known Secondary structure 

TTS

.........TTT

GGGS
SSGGGGGSGGGTTT
TTS
Template Predicted Secondary structure 






.........





























Template SS confidence 















































































   8990.........100.... .....110.........120.........130.........140.........150.........
 
   173... ...180.........190.........200.........210.........220...... ...230.........240 .
Predicted Secondary structure 
.....















.....








.
Query SS confidence 



. . . . .

















































. . . . .













.
Query Sequence  SDFK. . . . . RTVNAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSP. . . . . LIPGDPIVWRKNLS. E
Query Conservation      ..... 
          

  
 



                    



  
 ..... 

      
  
 . 
Alig confidence 



.....

















































.....













.
Template Conservation                           
                                    
         
   
   
Template Sequence  NWLKGLKENGKLYAKNSVALQAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQ
Template Known Secondary structure 
SSTTS
S
GGG
S


TT
GGG
BTT
S
Template Predicted Secondary structure 



































Template SS confidence 















































































   160.........170.........180.........190.........200.........210.........220.........230.........
 
   242.......250.........260.........270.....
Predicted Secondary structure 










Query SS confidence 

































Query Sequence  TTKDKIYDFFMNYGKTPEEKAVLERLGWAPFRAS
Query Conservation       
   

           
       
  
Alig confidence 










....










..





Template Conservation 
 
  

  
 ....
 
 
      .. 
  
 
Template Sequence  AEAQKFVDFLA. . . . SKKGQEALVAA. . RAEYPL
Template Known Secondary structure  ....S..S


Template Predicted Secondary structure 
....
..





Template SS confidence 

































   240.........250 .........260. ......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions