Job Description P16682 Confidence 99.40% Date Thu Jan 5 11:35:27 GMT 2012 Rank 41 Aligned Residues 217 % Identity 16% Template d1jw1a1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Transferrin Resolution 4.00

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		E	Q	E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	.	A	N	G	Q	V
Query Conservation																																																																												.
Alig confidence																					.	.	.	.																																																				.
Template Conservation																					.	.	.	.
Template Sequence		A	P	R	K	N	V	R	W	C	A	I	S	L	P	E	W	S	K	C	.	.	.	.	Y	Q	W	Q	R	R	M	R	K	L	G	A	P	S	I	T	C	V	R	R	T	S	V	L	E	C	I	R	A	I	A	G	K	N	A	D	A	V	T	L	D	D	G	M	V	F	E	A	G	R	D	P	Y	K	L	R	P
Template Known Secondary structure			T	T	S	S						S	S	S	T	T	T	S	S		.	.	.	.											S	S	S									S	T	T	T	T	T					T	T	S	S							S	T	T	T	T	T	T	T	S	S	S	S
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.					20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.							.	.	.
Predicted Secondary structure												.	.	.																																																											.	.	.	.	.	.
Query SS confidence												.	.	.																																																											.	.	.	.	.	.
Query Sequence		F	A	Q	T	V	A	A	D	G	S	.	.	.	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	.	.	.	.	.	.	F	K	R
Query Conservation												.	.	.																																																											.	.	.	.	.	.
Alig confidence												.	.	.																.									.	.	.	.																															.	.	.	.	.	.
Template Conservation																														.									.	.	.	.
Template Sequence		V	A	A	E	I	Y	G	T	E	K	S	P	Q	T	H	Y	Y	A	V	A	V	V	K	K	G	S	N	F	.	K	L	D	Q	L	Q	G	Q	.	.	.	.	K	S	C	H	M	G	L	G	R	S	A	G	W	N	I	P	V	G	I	L	R	P	P	L	S	W	T	E	S	A	E	P	L	Q	G	A	V	A	R
Template Known Secondary structure										T	T				S										T	T				.		G	G	G		S			.	.	.	.				B	S		S	S							S	T	T	S	S	S		G	G	G				T	T	T	S		T	T	T	S	S	S	S
Template Predicted Secondary structure																														.									.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		178	.	180	.																																				.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	V	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation																																																																					.
Template Sequence		F	F	S	A	S	C	V	P	C	V	D	G	K	A	Y	P	N	L	C	Q	L	C	K	G	V	G	E	N	K	C	A	C	S	S	Q	E	P	Y	F	G	Y	S	G	A	F	K	C	L	Q	D	G	A	G	D	V	A	F	V	K	E	T	T	V	F	E	N	L	.	P	E	K	A	D	R	D	Q	Y	E	L	L
Template Known Secondary structure		S							S	S	S		T	T	T		S	G	G	G	S	S			S		T	T	S	T	T		S	S	T	T	S	S	S	S	S	T	T	T	S	S					S	S	S	S		S		B			S	S	S						.			S	T	T	S	S	S
Template Predicted Secondary structure																																																																					.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230
		223	.	.	.															.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	K	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation																																			.	.
Template Sequence		C	L	N	N	T	R	A	P	V	D	A	F	K	E	C	H	L	A	Q	V	P	S	H	A	V	V	A	R	S	V	D	G	K	.	.	E	N	L	I	W	E	L	L	R	K	A	Q	E
Template Known Secondary structure			T	T	S					T	T		T	T	T	T		S												S	S	S	S		.	.					T					T	T	T	T
Template Predicted Secondary structure																																			.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions