Job Description P16682 Confidence 99.36% Date Thu Jan 5 11:35:27 GMT 2012 Rank 42 Aligned Residues 196 % Identity 20% Template d1jnfa2 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Transferrin Resolution 2.60

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.							.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.
Query Sequence		Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	.	.	.	.	.	.	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D
Query Conservation																																																													.	.	.	.	.	.
Alig confidence																																																.													.	.	.	.	.	.
Template Conservation																																																.
Template Sequence		D	E	W	S	V	T	S	G	G	L	I	E	C	E	S	A	E	T	P	E	D	C	I	A	K	I	M	N	G	E	A	D	A	M	S	L	D	G	G	Y	V	Y	I	A	G	Q	.	C	G	L	V	P	V	L	A	E	N	Y	E	S	T	D	C	K	K	A	P	E	E	G	Y	L	S	V	A	V	V	K	K	S
Template Known Secondary structure									T	S	S							S	S										T	T	S			B														.	T	T										S		S		T	T	S				S										S	S
Template Predicted Secondary structure																																																.
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.		.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.																															.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	K	R	T
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		N	P	D	I	N	W	N	N	L	E	G	K	.	.	.	.	K	S	C	H	T	A	V	D	R	T	A	G	W	N	I	P	M	G	L	L	Y	N	R	I	N	H	C	R	F	D	E	F	F	R	Q	G	C	A	P	G	S	Q	K	N	S	S	L	C	E	L	C	V	G	P	S	V	C	A	P	N	N	R	E	G
Template Known Secondary structure				S			G	G	G		T	T	S	.	.	.	.					S		T	T		T	T	T	T													S	S						S	S					T	T	S		T	T	S	G	G	G	T	T			S	S	S	T	T		S	S	T	T	S	T
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		435	.	.	.	.	440	.	.	.	.	.	.					.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210								.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.															.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	.	.	.	.	.	.	.	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	D	P	I	V	W	R	K
Query Conservation																																		.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.												.																	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.												.
Template Sequence		Y	Y	G	.	Y	T	G	A	F	R	C	L	V	E	K	.	G	D	V	A	F	V	K	S	Q	T	V	L	Q	N	T	G	G	R	N	S	E	P	W	A	K	D	L	K	E	E	D	F	E	L	L	C	L	D	G	T	R	K	P	V	S	E	A	H	N	C	H	L	A	K	A	P	N	H	A	V	V	S	R	K
Template Known Secondary structure		T			.											T	.		S						T	T						S	T	T	S	S		S	T	T	T	T	T			G	G	G						T	T	S					G	G	G	G	G	G	S		S												T
Template Predicted Secondary structure					.												.
Template SS confidence
		511	.	.		.	.	.	.	.	.	520	.	.	.	.		.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	A	A	C	V	K	Q	K	L	L	D	L	Q	V	E	F	G	N	T
Template Known Secondary structure		T	T																S	T	T
Template Predicted Secondary structure
Template SS confidence
		589	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions