Job Description P16682 Confidence 99.73% Date Thu Jan 5 11:35:27 GMT 2012 Rank 19 Aligned Residues 213 % Identity 18% Template d1ieja_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Transferrin Resolution 1.65

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.											.
Query SS confidence																																																																						.											.
Query Sequence		A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	.	D	R	A	N	G	Q	V	F	A	Q	.
Query Conservation																																																																						.											.
Alig confidence										.	.	.	.	.																																																								.											.
Template Conservation										.	.	.	.	.
Template Sequence		V	I	R	W	C	T	I	S	.	.	.	.	.	S	P	E	E	K	K	C	N	N	L	R	D	L	T	Q	Q	E	R	I	S	L	T	C	V	Q	K	A	T	Y	L	D	C	I	K	A	I	A	N	N	E	A	D	A	I	T	L	D	G	G	Q	V	F	E	A	G	L	A	P	Y	K	L	K	P	I	A	A	E
Template Known Secondary structure								S	S	.	.	.	.	.														T	T	T	S	S									S	S										T	T	S			B												T	S	T	T	T
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.						.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.														.	.
Predicted Secondary structure		.	.																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D
Query Conservation		.	.																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																							.									.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.									.	.	.	.
Template Sequence		V	Y	E	H	T	E	G	S	T	T	S	Y	Y	A	V	A	V	V	K	K	G	T	E	F	.	T	V	N	D	L	Q	G	K	.	.	.	.	T	S	C	H	T	G	L	G	R	S	A	G	W	N	I	P	I	G	T	L	L	H	R	G	A	I	E	W	E	G	I	E	S	G	S	V	E	Q	A	V	A	K	F
Template Known Secondary structure						S	S	S			S										T	T				.		G	G	G		T	T		.	.	.	.					S		T	T		T	T	T	T										T	T	S	S					G	G	G
Template Predicted Secondary structure																										.									.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		175	.	.	.																												.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	K	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.
Template Conservation																																																																				.	.	.
Template Sequence		F	S	A	S	C	V	P	G	A	T	I	E	Q	K	L	C	R	Q	C	K	G	D	P	K	T	K	C	A	R	N	A	P	Y	S	G	Y	S	G	A	F	H	C	L	K	D	G	K	G	D	V	A	F	V	K	H	T	T	V	N	E	N	A	P	D	Q	K	.	.	.	D	E	Y	E	L	L	C	L	D	G	S
Template Known Secondary structure		S	S					T	T			S		G	G	G	G	T	T			S		T	T	T	T	T	S	T	T	S	T	T												T	T	S		S						T	T							T	T	S	G	.	.	.	G	G						T	T	S
Template Predicted Secondary structure																																																																				.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.
																228	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	.	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation
Template Sequence		R	Q	P	V	D	N	Y	K	T	C	N	W	A	R	V	A	A	H	A	V	V	A	R	D	D	N	K	V	E	D	I	W	S	F	L	S	K	A	Q	S	D	F	G	V	D
Template Known Secondary structure					G	G	G	T	T	T	S		S												S	S	T	T																S	T	T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions