Job Description P16682 Confidence 98.94% Date Thu Jan 5 11:35:27 GMT 2012 Rank 54 Aligned Residues 197 % Identity 19% Template d1h76a2 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Transferrin Resolution 2.15

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.									.	120	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.
Query Sequence		Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	.	.	.	.	.	.	.	.	Y	W	S	V	L	I	V	N
Query Conservation																																																																		.	.	.	.	.	.	.	.
Alig confidence																																																.																		.	.	.	.	.	.	.	.
Template Conservation																																																.
Template Sequence		D	A	W	S	I	N	S	G	G	K	I	E	C	V	S	A	E	N	T	E	D	C	I	A	K	I	V	K	G	E	A	D	A	M	S	L	D	G	G	Y	I	Y	I	A	G	K	.	C	G	L	V	P	V	L	A	E	N	Y	K	T	E	G	E	N	C	V	N	T	P	E	K	G	Y	L	A	V	A	V	V	K
Template Known Secondary structure								T	T	T	S							S	S											T	S			B														.	T	T									S	S			S	T	T	G	G	G
Template Predicted Secondary structure																																																.
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.		.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
		127	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure								.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	D	S	P	I	N	.	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation								.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.									.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.
Template Sequence		K	S	S	G	P	D	L	N	W	N	N	L	K	G	K	.	.	.	.	K	S	C	H	T	A	V	D	R	T	A	G	W	N	I	P	M	G	L	L	Y	N	K	I	N	S	C	K	F	D	Q	F	F	G	E	G	C	A	P	G	S	Q	R	N	S	S	L	C	A	L	C	I	G	S	E	R	A	P	G	R	E
Template Known Secondary structure		T	T	S		T	T		S	G	G	G		T	T		.	.	.	.					S		T	T		T	T	T	T														S						S	S	S		B		T	T	S		T	T	S	G	G	G	T	T					S	S	S	T	T		T
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.					.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
				174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.								.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.															.	.	230
Predicted Secondary structure		.	.																																							.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																																							.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	.	.	.	.	.	.	.	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	G
Query Conservation		.	.																																							.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																					.																		.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.
Template Sequence		C	L	A	N	N	H	E	R	Y	Y	G	Y	T	G	A	F	R	C	L	V	E	K	.	G	D	V	A	F	V	K	D	Q	V	V	Q	Q	N	T	D	G	K	N	K	D	D	W	A	K	D	L	K	Q	M	D	F	E	L	L	C	Q	N	G	A	R	E	P	V	D	N	A	E	N	C	H	L	A	R	A	P	N
Template Known Secondary structure		T		S	S	T	T	S	T	T													T	.		S						T	T					T	S	T	T	S			S	T	T	T	T	T			G	G	G						T	T	S					G	G	G	G	G	G	S		S
Template Predicted Secondary structure																								.
Template SS confidence
		515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.		.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	A	V	V	A	R	D	D	K	V	T	C	V	A	E	E	L	L	K	Q	Q	A	Q	F	G	R	H
Template Known Secondary structure								G	G	G																S	T	T
Template Predicted Secondary structure
Template SS confidence
		594	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions