Job Description P16682 Confidence 99.84% Date Thu Jan 5 11:35:27 GMT 2012 Rank 8 Aligned Residues 212 % Identity 19% Template d1eh3a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Transferrin Resolution 2.00

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	.	A	N	G	Q	V	F	A	Q
Query Conservation																																																																									.
Alig confidence										.	.	.	.																																																												.
Template Conservation										.	.	.	.
Template Sequence		R	S	V	Q	W	C	A	V	.	.	.	.	S	Q	P	E	A	T	K	C	F	Q	W	Q	R	N	M	R	R	V	R	G	P	P	V	S	C	I	K	R	D	S	P	I	Q	C	I	Q	A	I	A	E	N	R	A	D	A	V	T	L	D	G	G	F	I	Y	E	A	G	L	A	P	Y	K	L	R	P	V	A	A
Template Known Secondary structure									S	.	.	.	.	S																	T	T										S	S										T	T	S			B													S	T	T	T
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.					.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure				.	.	.																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	V	.	.	.	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation				.	.	.																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.																					.									.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.									.	.	.	.
Template Sequence		E	V	Y	G	T	E	R	Q	P	R	T	H	Y	Y	A	V	A	V	V	K	K	G	G	S	F	.	Q	L	N	E	L	Q	G	L	.	.	.	.	K	S	C	H	T	G	L	R	R	T	A	G	W	N	V	P	I	G	T	L	R	P	F	L	D	W	T	G	P	P	E	P	I	E	A	A	V	A	R	F	F	S
Template Known Secondary structure							S	S	S			S										T	T				.		T	T			T	T		.	.	.	.					S		T	T		T	T	T	T								G	G	G	S					T	T	S								T	T	S	S
Template Predicted Secondary structure																											.									.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
																													173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Template Conservation																																																																	.
Template Sequence		A	S	C	V	P	G	A	D	K	G	Q	F	P	N	L	C	R	L	C	A	G	T	G	E	N	K	C	A	F	S	S	Q	E	P	Y	F	S	Y	S	G	A	F	K	C	L	R	D	G	A	G	D	V	A	F	I	K	E	S	T	V	F	E	D	.	L	S	D	E	A	E	R	D	E	Y	E	L	L	C	P	D
Template Known Secondary structure						T	T	S		T	T	T		G	G	G	T	T	T					G	G	G	T	T		S	S	T	T	S	T	T												T	T	S		S						S	S						.		S	S	G	G	G	G	G	G						T	T
Template Predicted Secondary structure																																																																	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
																226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation																																	.	.
Template Sequence		N	T	R	K	P	V	D	K	F	K	D	C	H	L	A	R	V	P	S	H	A	V	V	A	R	S	V	N	G	K	E	.	.	D	A	I	W	N	L	L	R	Q	A
Template Known Secondary structure		S					G	G	G	G	G	G	S		S												S	S	S				.	.
Template Predicted Secondary structure																																	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions