Job Description P16682 Confidence 98.88% Date Thu Jan 5 11:35:27 GMT 2012 Rank 59 Aligned Residues 216 % Identity 15% Template d1dota2 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Transferrin Resolution 2.35

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	Q	E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V
Query Conservation
Alig confidence														.	.	.								.	.	.	.	.																																																.
Template Conservation														.	.	.								.	.	.	.	.																																																.
Template Sequence		G	P	R	E	N	K	I	Q	W	C	A	V	.	.	.	G	K	D	E	K	S	K	.	.	.	.	.	C	D	R	W	S	V	V	S	N	G	E	V	E	C	T	I	L	D	D	N	K	D	C	I	V	K	I	T	K	G	E	A	D	A	I	S	L	D	G	G	F	V	Y	T	A	G	V	.	C	G	L	V	P
Template Known Secondary structure			S	S	T	T	S							.	.	.	S							.	.	.	.	.									T	S	S							S	S	S									T	T	S			B													T	.	T	T
Template Predicted Secondary structure														.	.	.								.	.	.	.	.																																																.
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350				.	.	.	.	.	.	.						.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.										.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.																																																									.
Query SS confidence														.	.	.	.	.	.	.	.	.																																																									.
Query Sequence		F	A	Q	T	V	A	A	D	G	S	P	G	.	.	.	.	.	.	.	.	.	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	.	F	K
Query Conservation														.	.	.	.	.	.	.	.	.																																																									.
Alig confidence														.	.	.	.	.	.	.	.	.														.														.	.	.	.																										.
Template Conservation																																				.														.	.	.	.
Template Sequence		V	V	G	E	S	Y	E	D	E	T	Q	C	S	K	D	E	E	Q	P	A	Y	Y	F	A	V	A	V	V	K	K	S	S	A	I	.	T	W	N	N	L	Q	G	K	K	S	C	H	T	.	.	.	.	A	V	G	R	T	A	G	W	N	I	P	M	G	L	I	H	N	K	T	G	S	C	D	F	D	D	Y	F
Template Known Secondary structure							S		T	T	S	S	S	S	S	S		S	S												S		S			.		G	G	G		T	T				B	B	S	.	.	.	.		T	T		T	T	T	T														S		G	G	G	T	S
Template Predicted Secondary structure																																				.														.	.	.	.
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.		.	.	.	.	.	.	450	.	.	.	.	.	.					.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
		177																																		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.								.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.
Query Sequence		R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	.	.	.	.	.	.	.	K	L
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																					.	.	.	.	.	.	.
Template Conservation																																																				.
Template Sequence		S	E	G	C	A	P	G	S	P	P	N	S	R	L	C	K	L	C	Q	G	S	G	E	N	L	L	E	K	C	V	A	S	S	H	E	K	Y	Y	G	Y	T	G	A	L	R	C	L	V	E	Q	.	G	D	V	A	F	I	K	H	S	T	V	G	E	N	V	S	G	S	N	K	D	D	W	A	K	G	L	T	R
Template Known Secondary structure		S	S		B		T	T	S		T	T	S	G	G	G	S	S				S	S	S	S	S	T	T	T	T		S	S	T	T	S	T	T													T	.		S						T	T	S					S	S	S	S			S	S	T	T	T	S			G
Template Predicted Secondary structure																																																				.
Template SS confidence
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.		.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
		217	.	.	220	.	.	.	.	.															.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	E	L	K	V	I	W	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	D	F	E	L	L	C	T	N	G	K	R	A	K	T	M	D	Y	K	T	C	H	L	A	K	V	P	T	H	A	V	V	A	R	P	E	K	A	N	K	I	R	E	L	L	E	G	Q	E	K	L	F	G	L	H
Template Known Secondary structure		G	G						T	T	S					T	T			T	T	S		S												T	T	T																S	T	T
Template Predicted Secondary structure
Template SS confidence
		564	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions