Job Description P16682 Confidence 99.33% Date Thu Jan 5 11:35:27 GMT 2012 Rank 44 Aligned Residues 213 % Identity 18% Template d1dota1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Transferrin Resolution 2.35

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		E	E	Q	E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	.	D	R	A	N	G	Q
Query Conservation																																																																											.
Alig confidence																.	.	.	.																	.																																							.
Template Conservation																.	.	.	.																	.
Template Sequence		A	P	P	K	T	T	V	R	W	C	T	I	S	S	.	.	.	.	A	E	E	K	K	C	N	S	L	K	D	H	M	Q	Q	E	.	R	V	T	L	S	C	V	Q	K	A	T	Y	L	D	C	I	K	A	I	S	N	N	E	A	D	A	I	S	L	D	G	G	Q	V	F	E	A	G	L	A	P	Y	K	L	K
Template Known Secondary structure													S	S	T	.	.	.	.	T									T	T	T	T	T	T	S	.	S	S								S	S										T	T	T			B												T	S	T	T
Template Predicted Secondary structure																.	.	.	.																	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.					.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		106	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure								.	.	.																																																																.	.	.	.	.	.	.	.
Query SS confidence								.	.	.																																																																.	.	.	.	.	.	.	.
Query Sequence		V	F	A	Q	T	V	.	.	.	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	.	.	.	.	.	.	.	.
Query Conservation								.	.	.																																																																.	.	.	.	.	.	.	.
Alig confidence								.	.	.																					.									.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation																															.									.	.	.	.
Template Sequence		P	I	A	A	E	V	Y	E	R	S	G	G	S	T	T	S	Y	Y	A	V	A	V	V	K	K	G	T	D	F	.	M	I	K	D	L	R	G	K	.	.	.	.	T	S	C	H	T	G	L	G	R	S	A	G	W	N	I	P	I	G	T	L	I	H	R	E	D	I	E	W	E	G	I	E	S	G	I	S	E	Q
Template Known Secondary structure										S	S	S				S										T	T				.		G	G	G		T	T		.	.	.	.					S		S	S		T	T	T	T											S	S	S						S	S				S
Template Predicted Secondary structure																															.									.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
							175	.	.	.																												.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure		.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	F	K	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I
Query Conservation		.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		A	V	A	K	F	F	S	A	S	C	V	P	G	A	T	I	E	Q	K	L	C	R	Q	C	K	G	D	A	K	T	K	C	L	R	N	G	P	Y	S	G	Y	S	G	A	F	Q	C	L	K	D	G	K	G	D	V	A	F	V	K	H	T	T	V	Q	E	N	A	P	E	E	K	.	.	.	D	E	Y	E	L	L
Template Known Secondary structure							S	S					T	T			S		S	T	T	T	T	T			S		S	S	S	T	T	S	S	S	S	T	T													T	S		S						T	T							S	S	S	G	.	.	.	G	G
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.
		223	.	.															.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	L	D	G	S	R	Q	P	V	D	S	Y	K	T	C	N	W	A	R	V	A	A	H	A	V	V	A	R	D	D	S	K	I	D	D	I	W	S	F	L	G	M	Q	A
Template Known Secondary structure			T	T	T					T	T			S	S	S		S												S	S	S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions