Job Description P16682 Confidence 99.42% Date Thu Jan 5 11:35:27 GMT 2012 Rank 40 Aligned Residues 196 % Identity 18% Template d1cb6a2 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Transferrin Resolution 2.00

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.														.	.	.	120	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	Y	W	S
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.
Template Sequence		N	Q	W	S	G	L	S	E	G	S	V	T	C	S	S	A	S	T	T	E	D	C	I	A	L	V	L	K	G	E	A	D	A	M	S	L	D	G	G	Y	V	Y	T	A	G	K	.	C	G	L	V	P	V	L	A	E	N	Y	K	S	Q	Q	S	S	D	P	D	P	N	C	V	D	R	P	V	E	G	Y	L	A
Template Known Secondary structure								T	T	T	S							S	S											T	S			B														.	T	T											S	S	S	S					T	T	G	G	G	S
Template Predicted Secondary structure																																																.
Template SS confidence
		1359	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.		.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.
Template Sequence		V	A	V	V	R	R	S	D	T	S	L	T	W	N	S	V	K	G	K	.	.	.	.	K	S	C	H	T	A	V	D	R	T	A	G	W	N	I	P	M	G	L	L	F	N	Q	T	G	S	C	K	F	D	E	Y	F	S	Q	S	C	A	P	G	S	D	P	R	S	N	L	C	A	L	C	I	G	D	E	Q	G
Template Known Secondary structure							S	S		T	T			G	G	G		T	T	S	.	.	.	.					S		T	T		T	T	T	T																G	G	G	T	S	S					T	T	S		T	T	S	G	G	G	T	T				S	T	T	S
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		1438	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.					.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.
								174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.								.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																										.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																										.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	.	.	.	.	.	.	.	K	L	K	E	L	K	V	I	W	K	S	P	L	I	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.																																										.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.									.																																	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.
Template Sequence		E	N	K	C	V	P	N	S	N	E	R	Y	Y	G	.	Y	T	G	A	F	R	C	L	A	E	N	A	G	D	V	A	F	V	K	D	V	T	V	L	Q	N	T	D	G	N	N	N	E	A	W	A	K	D	L	K	L	A	D	F	A	L	L	C	L	D	G	K	R	K	P	V	T	E	A	R	S	C	H	L	A
Template Known Secondary structure			S	T	T		S	S	T	T	S	T	T			.										T	T	S		S											T	T	S	T	T	S	S		S					T			G	G	G						T	T	S					G	G	G	G	G	G	S		S
Template Predicted Secondary structure																.
Template SS confidence
		1514	.	.	.	.	.	1520	.	.	.	.	.	.	.		.	.	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.
				229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		M	A	P	N	H	A	V	V	S	R	M	D	K	V	E	R	L	K	Q	V	L	L	H	Q	Q	A	K	F	G	R
Template Known Secondary structure												G	G	G																S	T
Template Predicted Secondary structure
Template SS confidence
		1593	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions