Job Description P16682 Confidence 99.23% Date Thu Jan 5 11:35:27 GMT 2012 Rank 46 Aligned Residues 221 % Identity 14% Template d1b1xa2 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Transferrin Resolution 2.62

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	H	A	E	E	Q	E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A
Query Conservation
Alig confidence																		.	.	.								.	.	.	.	.																																																.
Template Conservation																		.	.	.								.	.	.	.	.																																																.
Template Sequence		A	A	E	V	A	A	R	R	E	R	V	V	W	C	A	V	.	.	.	G	P	E	E	E	R	K	.	.	.	.	.	C	K	Q	W	S	D	V	S	N	R	K	V	A	C	A	S	A	S	T	T	E	E	C	I	A	L	V	L	K	G	E	A	D	A	L	N	L	D	G	G	F	I	Y	V	A	G	K	.	C
Template Known Secondary structure											S							.	.	.	S							.	.	.	.	.								T	T	S	S							S	S											T	S			B														.	T
Template Predicted Secondary structure																		.	.	.								.	.	.	.	.																																																.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350				.	.	.	.	.	.	.						.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.												.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.																																																					.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.																																																					.
Query Sequence		N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	.	.	.	.	.	.	.	.	.	.	.	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	.
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.																																																					.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.																											.
Template Conservation																																																			.	.	.	.
Template Sequence		G	L	V	P	V	L	A	E	N	Q	K	S	Q	N	S	N	A	P	D	C	V	H	R	P	P	E	G	Y	L	A	V	A	V	V	R	K	S	D	A	D	L	T	W	N	S	L	S	G	K	.	.	.	.	K	S	C	H	T	G	V	G	R	T	A	A	W	N	I	P	M	G	L	L	F	N	Q	T	G	S	C
Template Known Secondary structure		T										S		S	S			S	G	G	G	G	G	S													S	S			S			G	G	G		T	T		.	.	.	.					S		T	T		T	T	T	T
Template Predicted Secondary structure																																																			.	.	.	.
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.					.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
																																			171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																																	.	.	.
Template Conservation																																														.
Template Sequence		K	F	D	K	F	F	S	Q	S	C	A	P	G	A	D	P	Q	S	S	L	C	A	L	C	V	G	N	N	E	N	E	N	K	C	M	P	N	S	E	E	R	Y	Y	G	.	Y	T	G	A	F	R	C	L	A	E	K	A	G	D	V	A	F	V	K	D	V	T	V	L	Q	N	T	D	G	K	N	S	E	P	W
Template Known Secondary structure			G	G	G	T	S	S	S				T	T	S		T	T	S	T	T	B	S	S				S	T	T	S		S	T	T		S	S	T	T	S	T	T			.										T	T	S		S											T	T	S	T	T	S	S		S
Template Predicted Secondary structure																																														.
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.		.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
						215	.	.	.	.	220	.	.	.	.	.	.	.															.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	K	L	K	E	L	K	V	I	W	K	S	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T
Query Conservation		.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	D	L	K	Q	E	D	F	E	L	L	C	L	D	G	T	R	K	P	V	A	E	A	E	S	C	H	L	A	R	A	P	N	H	A	V	V	S	Q	S	D	R	A	Q	H	L	K	K	V	L	F	L	Q	Q	D	Q	F	G	G	N
Template Known Secondary structure				T			T	T	S						T	T	S					G	G	G	G	G	G	S		S												T	T	T																S	T	T
Template Predicted Secondary structure
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions