Job Description P16682 Confidence 99.89% Date Thu Jan 5 11:35:27 GMT 2012 Rank 4 Aligned Residues 289 % Identity 15% Template c3uifA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt Resolution 2.60 Å

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		28	.	30	.	.	.	.	.	.	.	.								.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.				.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.																																		.	.	.
Query SS confidence													.	.	.	.	.	.	.																																		.	.	.
Query Sequence		E	Q	E	K	A	L	N	F	G	I	I	.	.	.	.	.	.	.	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	.	.	.	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E
Query Conservation													.	.	.	.	.	.	.																																		.	.	.
Alig confidence													.	.	.	.	.	.	.																							.											.	.	.
Template Conservation																																										.
Template Sequence		E	D	L	K	V	V	R	I	A	S	V	A	T	N	V	G	G	K	T	V	Y	A	G	S	A	S	L	V	V	N	G	A	F	P	E	E	L	R	K	Q	.	G	I	K	V	E	W	V	P	A	A	X	A	S	V	G	P	V	I	N	E	G	F	A	S	G	K	I	D	F	G	I	Y	G	D	L	P	P	I	I
Template Known Secondary structure																	T	T						T								S	S								T	.	T										T	T												T	T									S
Template Predicted Secondary structure																																										.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R
Query Conservation
Alig confidence																							.	.	.	.																								.	.	.	.	.													.	.
Template Conservation																							.	.	.	.																								.	.	.	.	.													.	.
Template Sequence		L	N	A	S	K	P	T	V	Q	L	V	A	P	W	G	T	T	S	N	S	Y	.	.	.	.	L	V	V	P	K	N	S	T	A	K	S	I	K	D	L	K	G	K	K	I	A	L	H	.	.	.	.	.	R	G	R	P	W	E	L	A	F	S	N	L	.	.	L	Q	S	E	G	L	T	F	K	D	F	K	I
Template Known Secondary structure						S																	.	.	.	.					T	T					S	G	G	G	G	T	T	S						.	.	.	.	.	T	T	S	T									.	.				T	T			G	G	G	S
Template Predicted Secondary structure																							.	.	.	.																								.	.	.	.	.													.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.						.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.						.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																																		.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.
Query Sequence		T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	.	.	.	.	.	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M
Query Conservation																																																		.	.	.	.	.
Alig confidence					.																																.	.	.	.	.	.								.	.	.	.	.
Template Conservation					.																																.	.	.	.	.	.
Template Sequence		V	N	V	.	N	P	Q	V	G	A	A	A	L	A	S	G	T	V	D	G	F	F	S	L	F	D	S	Y	I	L	E	D	R	G	V	.	.	.	.	.	.	G	K	I	I	W	S	T	K	T	A	P	V	D	W	K	L	X	G	G	V	W	A	R	N	D	F	V	K	Q	N	P	E	I	T	Q	A	I	V	T
Template Known Secondary structure					.												T	S	S	S					S	T	T							T	T	S	.	.	.	.	.	.							G	G	G	S		G	G	G	S
Template Predicted Secondary structure					.																																.	.	.	.	.	.
Template SS confidence
		173	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.							.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	G	K	T	P	E	E	K	A	V	L	E	R	L	G	W	A	P	F	R	A	S	S	D	L	Q	L	V	P	I	R	Q	L	A	L	F	K	E	M	Q	G	V	K	S	N	K	G	L	N	E	Q	D	K	L	A	K	T	T	E	I	Q	A	Q	L	D	D	L	D	R	L	N	N	A	L	S	A	M	S	S
Query Conservation
Alig confidence																																																							.	.	.
Template Conservation																																																							.	.	.
Template Sequence		A	Y	L	K	S	V	H	W	V	A	Q	D	E	N	K	E	T	Y	I	R	E	Y	S	N	K	I	Y	P	E	S	V	N	R	R	E	Y	D	Q	D	N	V	S	W	R	Q	R	W	S	P	L	Y	D	V	.	.	.	A	L	Q	E	H	Y	R	K	A	V	A	Y	A	Q	A	S	G	L	T	R	T	Q	A	D
Template Known Secondary structure												S	G	G	G								T	S		T	T	S								T	T	T	T		S	S		T	T	G	G	G							.	.	.																T	T	S		S	S
Template Predicted Secondary structure																																																							.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.				.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		333	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	K	A	V	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	Q	X	L	N
Template Known Secondary structure						B
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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