Job Description P16682 Confidence 99.58% Date Thu Jan 5 11:35:27 GMT 2012 Rank 31 Aligned Residues 212 % Identity 13% Template c3tmgA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi Resolution 1.90 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	.	.	.	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F
Query Conservation																																																											.	.	.
Alig confidence																							.	.	.						.											.																	.	.	.
Template Conservation																							.	.	.						.											.
Template Sequence		K	S	V	K	I	G	Y	V	N	W	G	G	E	T	A	A	T	N	V	L	K	.	.	.	V	V	F	E	K	.	M	G	Y	N	A	E	I	F	S	V	.	T	T	S	I	M	Y	Q	Y	L	A	S	G	K	I	D	G	T	V	S	S	W	V	P	T	A	D	K	F	Y	Y	E	K	L	K	T	K	F	V	D
Template Known Secondary structure																							.	.	.						.	T	T									.											T	T	S	S	S								T	T	T	T								G	G	G
Template Predicted Secondary structure																							.	.	.						.											.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.		.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.								.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																																.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.
Query Sequence		A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	.	.	.	.	.	.	.	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N
Query Conservation																																.	.	.	.	.	.	.
Alig confidence													.	.	.	.																.	.	.	.	.	.	.									.	.	.	.	.													.	.
Template Conservation													.	.	.	.																															.	.	.	.	.													.	.
Template Sequence		L	G	A	N	Y	E	G	T	I	Q	G	.	.	.	.	F	V	V	P	S	Y	V	P	I	S	S	I	S	E	L	K	G	K	G	D	K	F	K	N	K	M	I	G	I	D	.	.	.	.	.	A	G	A	G	T	Q	I	V	T	E	Q	A	.	.	L	N	Y	Y	G	L	S	K	E	Y	E	L	V	P	S	S
Template Known Secondary structure													.	.	.	.					T	T	S				B	G	G	G	G	T	T		G	G	G	G	T	T						S	.	.	.	.	.	T	T											.	.				T	T		T	T	T	S
Template Predicted Secondary structure													.	.	.	.																															.	.	.	.	.													.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.						.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		181	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.					.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure				.	.																																												.	.	.	.
Query SS confidence				.	.																																												.	.	.	.
Query Sequence		A	G	.	.	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	.	.	.	.	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y
Query Conservation				.	.																																												.	.	.	.
Alig confidence				.	.																															.	.	.	.	.	.	.							.	.	.	.																						.
Template Conservation																																				.	.	.	.	.	.	.																																.
Template Sequence		E	S	V	M	L	A	S	L	D	S	S	I	K	R	N	E	W	I	L	V	P	L	W	K	P	H	W	A	F	S	R	Y	D	I	.	.	.	.	.	.	.	K	F	L	D	D	P	D	L	I	M	G	G	I	E	S	V	H	T	L	V	R	L	G	L	E	N	D	D	F	D	A	.	Y	Y	V	F	D	H	F
Template Known Secondary structure															T	T										S		T					S			.	.	.	.	.	.	.				B		T	T		T	T		S	S									T	T									.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.																																.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.								.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.
		255	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	T	P	E	E	K	A	V	L	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	W	S	D	D	L	I	L	P	L	M	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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