Job Description P16682 Confidence 96.38% Date Thu Jan 5 11:35:27 GMT 2012 Rank 126 Aligned Residues 232 % Identity 13% Template c3rpwA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter; PDBTitle: the crystal structure of an abc transporter from rhodopseudomonas2 palustris cga009 Resolution 1.65 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																																							.					.	.
Query SS confidence																																																							.					.	.
Query Sequence		Q	E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	.	F	N	K	V	.	.	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q
Query Conservation																																																							.					.	.
Alig confidence												.	.	.																																									.					.	.
Template Conservation												.	.	.
Template Sequence		Q	S	N	V	V	I	X	Q	D	P	.	.	.	G	G	G	Y	G	D	A	L	R	K	V	X	Y	D	P	F	E	K	E	T	G	I	K	V	V	T	V	Q	E	A	R	S	G	P	R	I	K	A	Q	A	E	A	G	K	A	Q	W	D	L	T	F	I	F	D	Q	E	T	K	L	L	G	D	C	C	L	A	D
Template Known Secondary structure				S								.	.	.												T									S									S													T					S	B											T					B
Template Predicted Secondary structure												.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.																			.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.												.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.												.
Query Sequence		V	F	A	Q	T	V	A	A	D	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	Y	W	S	V	L	I	V	N	K	D	.	.	.	.	.	S	P	I	N	N	L	N	D	L	L	A	.	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.												.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.												.
Template Conservation
Template Sequence		I	D	Y	S	K	L	S	E	S	A	H	K	T	L	A	A	X	P	D	N	L	K	R	K	K	G	V	A	L	Q	V	I	G	V	G	L	V	Y	N	K	D	K	F	K	G	D	K	A	P	Q	T	W	A	D	F	W	D	V	K	K	F	P	G	R	R	C	X	P	A	W	P	R	F	T	F	E	A	A	L	X
Template Known Secondary structure				G	G	G	S										T	S		G	G	G			T	T															T	T	T	S		T	T	S	S			S							T	T	T	S		S						S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.														.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Template Conservation																																																																				.	.	.	.
Template Sequence		A	D	G	V	T	K	D	K	L	Y	P	I	D	X	D	R	A	L	K	K	L	K	E	I	K	P	H	V	V	K	W	W	T	T	A	A	Q	P	P	Q	L	I	L	D	G	E	A	D	X	C	L	A	Y	T	G	S	X	S	K	L	A	L	E	G	A	P	.	.	.	.	I	D	L	T	F	N	Q	G	F	V
Template Known Secondary structure			T	T			T	T	S			S														G	G	G							S	T	T								T	T	S		S																T		S	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250					.	.	.	.	.	.	.	.	.	260
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E	K	A	V	L	E	R	L	G	W
Query Conservation
Alig confidence												.	.
Template Conservation												.	.
Template Sequence		Y	Y	D	F	F	S	I	P	K	G	.	.	A	P	N	Y	D	N	A	L	K	L	L	S	W	R	L	D	P	K	R	A	A	Q	L	T	S	T	F	P	V
Template Known Secondary structure									B	T	T	.	.		T	T												T												S
Template Predicted Secondary structure												.	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions