Job Description P16682 Confidence 98.69% Date Thu Jan 5 11:35:27 GMT 2012 Rank 75 Aligned Residues 217 % Identity 12% Template c3r6uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:choline-binding protein; PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis Resolution 1.61 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																										.																																				.	.	.	.
Query SS confidence																																										.																																				.	.	.	.
Query Sequence		K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	.	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	.	.	.	.
Query Conservation																																										.																																				.	.	.	.
Alig confidence																							.	.	.																	.																																				.	.	.	.
Template Conservation																							.	.	.
Template Sequence		Q	T	I	K	I	G	A	Q	S	M	S	E	S	E	I	I	A	S	M	L	G	.	.	.	Q	L	I	E	H	H	T	D	L	K	T	T	T	I	K	N	L	G	S	N	A	V	Q	Q	Q	A	L	M	N	G	E	I	D	I	A	A	T	R	Y	T	G	D	A	L	T	G	T	L	R	M	E	P	E	K	D	P
Template Known Secondary structure										S	S												.	.	.							S	S											S										T	T	S		S														T	T							S
Template Predicted Secondary structure																							.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.				.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
																	106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.					130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	.	.	.	.	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.								.	.	.	.
Template Conservation																																.	.
Template Sequence		D	K	A	L	A	L	T	Q	R	E	F	K	K	R	Y	D	L	K	W	Y	D	S	Y	G	F	D	N	T	Y	A	.	.	F	T	V	S	K	E	L	A	D	Q	Y	H	L	E	T	V	S	D	V	K	K	W	A	P	Q	L	K	L	G	V	D	N	Y	W	M	K	L	K	G	N	G	Y	Q	D	F	T	K	T
Template Known Secondary structure																									S		B					.	.												T			B	S	G	G	G	G	G	G	G	G	G							T	T	G	G	G		S	S	S	S
Template Predicted Secondary structure																																.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																																																.	.	.
Query SS confidence																																																																.	.	.
Query Sequence		K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	.	.	.	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T
Query Conservation																																																																.	.	.
Alig confidence						.	.	.	.																																						.	.	.	.	.	.	.											.	.	.
Template Conservation						.	.	.	.																																						.	.	.	.	.	.	.
Template Sequence		Y	G	M	T	.	.	.	.	F	G	G	T	Y	P	M	Q	I	G	L	V	Y	D	A	V	K	S	G	K	M	D	I	V	L	A	Y	S	T	D	G	R	I	K	S	Y	G	.	.	.	.	.	.	.	L	K	M	L	K	D	D	K	Q	F	F	P	P	Y	D	C	S	P	V	V	P	E	K	V	L	K	E	H
Template Known Secondary structure						.	.	.	.		S							G	G	G								T	S		S						T	T							T	T	.	.	.	.	.	.	.					B		T	T			S				B													S
Template Predicted Secondary structure						.	.	.	.																																						.	.	.	.	.	.	.
Template SS confidence
		167	.	.	170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.								.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		K	D	K	I	Y	D	F	F	M	N	Y	G	K	.	.	T	P	E	E	K	A	V	L
Query Conservation															.	.
Alig confidence				.											.	.
Template Conservation				.
Template Sequence		P	E	.	L	E	G	I	I	K	K	M	L	G	K	I	D	T	A	T	M	Q	E	L
Template Known Secondary structure		T	T	.							T	T	T	T
Template Predicted Secondary structure				.
Template SS confidence
		236	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions