Job Description P16682 Confidence 98.50% Date Thu Jan 5 11:35:27 GMT 2012 Rank 88 Aligned Residues 206 % Identity 13% Template c3pppA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein; PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.
Predicted Secondary structure																																										.																		.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.																		.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	.	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	.	.	.	A	W	Y	G	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																										.																		.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.																	.																		.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.
Template Sequence		D	T	I	K	I	G	A	Q	S	M	T	E	S	E	I	V	A	N	M	I	A	.	.	.	Q	L	I	E	H	D	T	D	L	N	T	A	L	V	K	N	L	G	S	N	Y	V	Q	H	Q	A	M	L	G	G	D	I	D	I	S	A	T	R	Y	S	G	T	D	L	T	S	T	L	G	K	E	A	E	K	D	P
Template Known Secondary structure										S	S												.	.	.								S											S										T	T	S		S													T	T	S
Template Predicted Secondary structure																							.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.				.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
				94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																		.	.	.
Query SS confidence		.	.																																		.	.	.
Query Sequence		.	.	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	.	.	.	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N
Query Conservation		.	.																																		.	.	.
Alig confidence		.	.																																		.	.	.
Template Conservation
Template Sequence		K	K	A	L	N	I	V	Q	N	E	F	Q	K	R	F	S	Y	K	W	F	D	S	Y	G	F	D	N	T	Y	A	F	T	V	T	K	K	F	A	E	K	E	H	I	N	T	V	S	D	L	K	K	N	A	S	Q	Y	K	L	G	V	D	N	A	W	L	K	R	K	G	D	G	Y	K	G	F	V	S	T	Y	G
Template Known Secondary structure																									S		B																T		S	B	G	G	G	G	G	G	G	G	G	G							T	T	T	T	T		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.
Query SS confidence																																																												.	.	.
Query Sequence		N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	.	.	.	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D
Query Conservation																																																												.	.	.
Alig confidence			.	.	.	.																																							.	.	.	.	.	.	.									.	.	.
Template Conservation			.	.	.	.																																							.	.	.	.	.	.	.
Template Sequence		F	.	.	.	.	E	F	G	T	T	Y	P	M	Q	I	G	L	V	Y	D	A	V	K	N	G	K	M	D	A	V	L	A	Y	S	T	D	G	R	I	K	A	Y	D	.	.	.	.	.	.	.	L	K	I	L	K	D	D	K	R	F	F	P	P	Y	D	C	S	P	V	I	P	E	K	V	L	K	E	H	P	E
Template Known Secondary structure			.	.	.	.			S							G	G	G							T	T	S		S						T	T		T					T	T	.	.	.	.	.	.	.					B		T	T			S				B													S	T	T
Template Predicted Secondary structure			.	.	.	.																																							.	.	.	.	.	.	.
Template SS confidence
		189					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.								.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		246	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	Y	D	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	G	V	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions