Job Description P16682 Confidence 97.82% Date Thu Jan 5 11:35:27 GMT 2012 Rank 108 Aligned Residues 228 % Identity 11% Template c3o66A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline abc transporter; PDBTitle: crystal structure of glycine betaine/carnitine/choline abc transporter Resolution 1.86 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.
Predicted Secondary structure																																											.	.	.																		.	.	.						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.																		.	.	.						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	.	.	.	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	.	.	.	A	W	Y	G	N	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																											.	.	.																		.	.	.						.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.																	.	.	.																		.	.	.						.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.
Template Sequence		K	N	D	V	K	I	T	A	L	S	T	S	E	S	Q	I	I	S	H	X	L	R	.	.	.	L	L	I	E	H	D	T	H	G	K	I	K	P	T	L	V	N	N	L	G	S	S	T	I	Q	H	N	A	L	I	N	G	D	A	N	I	S	G	V	R	Y	N	G	T	D	L	T	G	A	L	K	E	A	P	I
Template Known Secondary structure											S	S												.	.	.							T	T	T	S										S	S											T	S		S													T	T	T
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
						93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																						.	.	.
Query SS confidence		.	.	.	.																																						.	.	.
Query Sequence		.	.	.	.	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	.	.	.	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F
Query Conservation		.	.	.	.																																						.	.	.
Alig confidence		.	.	.	.																																						.	.	.																														.	.	.
Template Conservation																																																																											.	.	.
Template Sequence		K	D	P	K	K	A	X	I	A	T	Q	Q	G	F	K	K	K	F	D	Q	T	F	F	D	S	Y	G	F	A	N	T	Y	A	F	X	V	T	K	E	T	A	K	K	Y	H	L	E	T	V	S	D	L	A	K	H	S	K	D	L	R	L	G	X	D	S	S	W	X	N	G	D	G	Y	.	.	.	E	G	F	K
Template Known Secondary structure			S																	S								S		B																T		S	B	S	G	G	G	T	T	T	G	G	G							G	G	G					S		.	.	.
Template Predicted Secondary structure																																																																											.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D
Query Conservation
Alig confidence							.	.	.																																																		.	.	.	.
Template Conservation							.	.	.																																																		.	.	.	.
Template Sequence		K	E	Y	G	F	.	.	.	D	F	G	T	V	R	P	X	Q	I	G	L	V	Y	D	A	L	N	T	E	K	L	D	V	A	L	G	Y	S	T	D	G	R	I	A	A	Y	D	L	K	V	L	K	D	D	K	Q	F	F	.	.	.	.	P	P	Y	A	A	S	A	V	A	T	N	E	L	L	R	Q	H	P	E
Template Known Secondary structure							.	.	.			S							G	G	G							T	T	S		S						T	T							T	T					B		T	T			S	.	.	.	.				B														T
Template Predicted Secondary structure							.	.	.																																																		.	.	.	.
Template SS confidence
		188	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.					.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		246	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		K	I	Y	D	F	F	M	N	Y	.	.	.	G	K	T	P	E	E	K	A	V	L	E	R	L	G	W	A	P
Query Conservation											.	.	.
Alig confidence		.									.	.	.
Template Conservation		.
Template Sequence		.	L	K	T	T	I	N	K	L	T	G	K	I	S	T	S	E	X	Q	R	L	N	Y	E	A	D	G	K	G
Template Known Secondary structure		.							T	T	T	T																T	S
Template Predicted Secondary structure		.
Template SS confidence
			261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions