Job Description P16682 Confidence 24.58% Date Thu Jan 5 11:35:27 GMT 2012 Rank 242 Aligned Residues 195 % Identity 13% Template c3n6uA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:lysr type regulator of tsambcd; PDBTitle: effector binding domain of tsar in complex with its inducer p-2 toluenesulfonate Resolution 1.87 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V
Query Conservation
Alig confidence																						.	.	.																	.																									.	.	.	.
Template Conservation																						.	.	.																	.																									.	.	.	.
Template Sequence		H	I	T	F	A	A	S	P	A	I	A	L	A	A	L	P	L	A	L	A	.	.	.	S	F	A	R	E	F	P	D	V	T	V	N	V	R	D	G	.	M	Y	P	A	V	S	P	Q	L	R	D	G	T	L	D	F	A	L	T	A	A	H	K	H	.	.	.	.	D	I	D	T	D	L	E	A	Q	P	L	Y
Template Known Secondary structure														T								.	.	.							T	T									.		T	T	T	T						T	T	S		S								G	G	.	.	.	.	G	S		T	T
Template Predicted Secondary structure																						.	.	.																	.																									.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.					.	.	.	.	.	.	.	160	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	.	.	.	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L
Query Conservation																			.	.	.
Alig confidence					.	.	.	.	.	.									.	.	.													.	.	.	.																														.	.	.
Template Conservation					.	.	.	.	.	.																								.	.	.	.																														.	.	.
Template Sequence		V	S	D	.	.	.	.	.	.	V	V	I	V	G	Q	R	Q	H	P	M	A	N	A	T	R	L	A	E	L	Q	E	C	.	.	.	.	R	W	A	F	S	S	A	P	R	G	P	G	A	I	I	R	N	A	F	A	R	Y	G	L	P	E	P	K	L	.	.	.	G	L	V	C	E	S	F	L	A	L	P	G
Template Known Secondary structure					.	.	.	.	.	.							T	T		T	T	T	T			S	G	G	G	G	T	T	S	.	.	.	.								T	T	S	T	T										T	T							.	.	.							T	T	T
Template Predicted Secondary structure					.	.	.	.	.	.																								.	.	.	.																														.	.	.
Template SS confidence
		165	.	.							.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																															.	.								.
Query SS confidence																																															.	.								.
Query Sequence		A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	.	.	V	W	R	K	N	L	S	.	E	T	T	K	D	K	I	Y	D	F	F	M	N
Query Conservation																																															.	.								.
Alig confidence																										.	.	.	.	.	.																.	.								.
Template Conservation																										.	.	.	.	.	.
Template Sequence		V	V	A	H	S	D	L	L	T	T	M	P	R	T	L	Y	E	R	N	A	F	K	D	Q	.	.	.	.	.	.	L	C	S	I	P	L	Q	D	A	L	P	N	P	T	I	Y	V	L	R	R	H	D	L	P	V	T	P	A	A	A	G	L	I	R	W	I	Q	H
Template Known Secondary structure					T	S	S		B										S	S	T	T	G	G	G	.	.	.	.	.	.								S													T	T	S
Template Predicted Secondary structure																										.	.	.	.	.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.							.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions