Job Description P16682 Confidence 96.46% Date Thu Jan 5 11:35:27 GMT 2012 Rank 125 Aligned Residues 214 % Identity 21% Template c3myuB_ PDB info PDB header:vib binding protein Chain: B: PDB Molecule:high affinity transport system protein p37; PDBTitle: mycoplasma genitalium mg289 Resolution 1.95 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.										.	.
Query SS confidence																											.										.	.
Query Sequence		A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	.	M	E	K	K	L	G	V	K	V	.	.	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A
Query Conservation																											.										.	.
Alig confidence																											.										.	.																																		.
Template Conservation																																																																								.
Template Sequence		T	L	I	F	N	I	S	L	D	H	N	A	D	T	S	I	E	K	F	F	T	V	F	S	K	K	L	S	G	K	L	N	K	K	I	N	V	N	F	N	I	V	D	D	S	F	T	K	I	N	N	I	Q	A	N	K	A	D	F	A	F	V	N	S	Q	A	I	A	S	N	.	N	W	F	G	Y	T	P	L	I
Template Known Secondary structure											T	T	G	G	G	T																	T	S																					T	T	S		S						G	G	G					.	S	S	S	S
Template Predicted Secondary structure																																																																								.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.
		109	110																																											.	.	.	.	.	.	.	.													.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Query Sequence		Q	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	A	D	G	S	P	G	.	.	.	.	.	.	.	.	.	.	.	.	Y	W	S	V	L	I	V	N	K	D	S	P	I	.	.	.
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Template Conservation
Template Sequence		Q	T	L	T	T	A	F	K	E	D	L	E	L	D	Y	Y	E	D	G	N	L	Q	K	K	A	E	K	T	N	L	L	F	L	S	P	P	Y	K	E	W	D	D	I	K	Q	K	W	T	G	N	R	Y	D	F	L	Y	E	P	S	K	L	V	S	F	Y	R	S	M	I	L	I	T	G	S	A	S	E	I	T	A
Template Known Secondary structure									T	T	B		S				G	G	G	T														S	S	S		G	G	G			T	T	T	T	T	B		S	S	S	B	G	G	G								S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
									132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170												.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	.	.	.	.	.	.	.	.	.	.	.	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K
Query Conservation		.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.										.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Conservation																		.	.	.	.																																																					.	.	.	.	.	.
Template Sequence		I	K	K	A	W	N	E	K	N	W	N	Q	F	M	K	F	.	.	.	.	G	I	G	H	G	Q	T	N	S	A	S	R	F	E	L	P	D	L	L	F	R	K	H	F	A	K	N	Y	P	G	L	Q	N	A	I	N	S	D	P	D	K	F	A	V	V	R	G	R	E	I	G	I	.	.	.	.	.	.	N	K
Template Known Secondary structure								T	T							T	T	.	.	.	.							T	T		T	T	T	T												G	G	G												G	G	G						G	G	G	T	T	S	.	.	.	.	.	.	S	T
Template Predicted Secondary structure																		.	.	.	.																																																					.	.	.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.					.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.							260	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.									.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.
Query Sequence		Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	.	.	.	.	.	.	.	.	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T
Query Conservation																				.	.	.	.	.	.	.	.
Alig confidence															.					.	.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		N	I	K	I	V	F	D	D	A	N	S	F	S	.	W	T	Q	N	I	K	K	R	P	F	Y	T	P	I	D	P	N	D	R	L	E	I	L	T	Y	S	D	P	L	L	Y	D	I	G	I	V	S	N	N	L	S	R	I	Y	Q	K	A	I	G	E	I	F	I	E	L	A	Q	S
Template Known Secondary structure		T								T	T	G	G	G	.	G	S								T	T			S	S	T	T																					T	T	S																		T
Template Predicted Secondary structure															.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions