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Job DescriptionP16682
Confidence96.46%DateThu Jan 5 11:35:27 GMT 2012
Rank125Aligned Residues214
% Identity21%Templatec3myuB_
PDB info PDB header:vib binding proteinChain: B: PDB Molecule:high affinity transport system protein p37; PDBTitle: mycoplasma genitalium mg289
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50...... ...60..... ....70.........80.........90.........100........
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Query Sequence  ALNFGIISTESQQNLKPQWTPFLQD. MEKKLGVKV. . NAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFA
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Template Sequence  TLIFNISLDHNADTSIEKFFTVFSKKLSGKLNKKINVNFNIVDDSFTKINNIQANKADFAFVNSQAIASN. NWFGYTPLI
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TTGGGTTS




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   33......40.........50.........60.........70.........80.........90.........100.. .......110.
 
   109110 ........ .120.........130.
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Query Sequence  QT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VAADGSPG. . . . . . . . . . . . YWSVLIVNKDSPI. . .
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Template Sequence  QTLTTAFKEDLELDYYEDGNLQKKAEKTNLLFLSPPYKEWDDIKQKWTGNRYDFLYEPSKLVSFYRSMILITGSASEITA
Template Known Secondary structure  TTB
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GGGT
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   112.......120.........130.........140.........150.........160.........170.........180.........190.
 
   132.......140.........150.........160.........170 .........180.........190...
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Query Sequence  . . . . . . . NNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNI. . . . . . . . . . . SASDFKRTVNAGHETNALAVANK
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Template Sequence  IKKAWNEKNWNQFMKF. . . . GIGHGQTNSASRFELPDLLFRKHFAKNYPGLQNAINSDPDKFAVVRGREIGI. . . . . . NK
Template Known Secondary structure  TT
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   192.......200....... ..210.........220.........230.........240.........250......... 260.
 
   194.....200.........210. ........220.........230.........240.........250.......
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Query Sequence  QVDVATNNTENLDKLKTS. . . . . . . . APEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKT
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Template Sequence  NIKIVFDDANSFS. WTQNIKKRPFYTPIDPNDRLEILTYSDPLLYDIGIVSNNLSRIYQKAIGEIFIELAQS
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   262.......270.... .....280.........290.........300.........310.........320.........330..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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