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Job DescriptionP16682
Confidence99.01%DateThu Jan 5 11:35:27 GMT 2012
Rank48Aligned Residues216
% Identity13%Templatec3mplA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:virulence sensor protein bvgs; PDBTitle: crystal structure of bordetella pertussis bvgs vft2 domain (double2 mutant f375e/q461e)
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.... .....50.........60.........70.........80.........90.........100..
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Query Sequence  EQEKALNFGIISTESQQ. . . . . NLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRA
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Template Sequence  ADHPVVKVAVLNLFAPFTLFREQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSGEADMAGALEVNSARESFLS
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STTTT


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GGGTTT
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   304.....310.........320.........330.........340.........350.........360.........370.........380...
 
   103......110.........120.........130.........140.........150.........160.........170.........180..
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Query Sequence  NGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAG
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Template Sequence  FSRPYVRNG. . . . . . . . MVIVTRQDPDAPVDADHLDGR. . . . TVALVRNSAAIPLLQRRY. . . . . . . . . . PQAKVVTADN
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TTTT

TTS....TT
TSS..........TT
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   386...390.... .....400.........410..... ....420.........430... ......440...
 
   183......190.........200.........210.........220.........230.........240.........250.........260..
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Query Sequence  HETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKA
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Template Sequence  PSEAMLMVANGQADAVVETQISASYYVNRYFA. . GKLRIASALDLPPAEIALATTRGQTELMSILNKALYSI. SNDELAS
Template Known Secondary structure  TS
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T..TT

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   444.....450.........460.........470..... ....480.........490.........500.........510... ......520
 
   263.....
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Query Sequence  VLERLG
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Template Sequence  IISRWR
Template Known Secondary structure  TT
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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