Job Description P16682 Confidence 98.91% Date Thu Jan 5 11:35:27 GMT 2012 Rank 56 Aligned Residues 191 % Identity 16% Template c3kzgB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila Resolution 2.06 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N
Query Conservation
Alig confidence																					.																																				.	.	.	.	.	.	.	.
Template Conservation																					.																																				.	.	.	.	.	.	.	.
Template Sequence		L	X	Q	E	I	C	R	R	L	H	A	T	C	T	F	E	A	Y	I	.	F	D	D	L	F	P	A	L	K	N	R	E	V	D	L	V	I	A	S	X	I	I	T	D	E	R	K	K	H	F	I	F	S	L	P	.	.	.	.	.	.	.	.	Y	X	E	S	N	S	Q	Y	I	T	T	V	D	S	K	I	S
Template Known Secondary structure											T										.	G	G	G							T	T	S	S	S				S	S		B							T	T							.	.	.	.	.	.	.	.	S	B										T	T		S
Template Predicted Secondary structure																					.																																				.	.	.	.	.	.	.	.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.									.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A
Query Conservation
Alig confidence										.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	F	D	D	L	H	G	K	.	.	.	.	K	I	G	V	R	K	G	T	P	Y	A	R	Q	V	L	S	.	.	.	.	.	.	.	.	.	.	E	N	R	N	N	Q	V	I	F	Y	E	L	I	Q	D	X	L	L	G	L	S	N	N	Q	V	D	A	S	L	X	D	Y	E	A	A	K	Y	W	X	A	S	E
Template Known Secondary structure		S	G	G	G	G	T	T		.	.	.	.						T	T	S	T								.	.	.	.	.	.	.	.	.	.	T		S								S	S										T	T	S	S	S												T	T	S	S	S
Template Predicted Secondary structure										.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.											.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		213	.	.					.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.
Query SS confidence					.	.	.	.
Query Sequence		P	E	K	.	.	.	.	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E	K	A	V	L	E	R
Query Conservation					.	.	.	.
Alig confidence					.	.	.	.
Template Conservation
Template Sequence		P	Y	A	Y	K	L	I	G	K	K	Y	K	L	I	G	K	K	I	S	I	G	E	G	Y	S	I	X	A	N	P	D	Q	F	V	L	I	K	K	I	N	K	I	L	L	E	X	E	A	D	G	T	Y	L	R	L	Y	S	E
Template Known Secondary structure			S	S		T	T	T			S											T	T		B						G	G	G																		T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions