Job Description P16682 Confidence 98.74% Date Thu Jan 5 11:35:27 GMT 2012 Rank 72 Aligned Residues 215 % Identity 17% Template c3k4uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:binding component of abc transporter; PDBTitle: crystal structure of putative binding component of abc transporter2 from wolinella succinogenes dsm 1740 complexed with lysine Resolution 2.62 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.							50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																				.			.	.	.	.	.	.
Query SS confidence																				.			.	.	.	.	.	.
Query Sequence		E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	.	P	Q	.	.	.	.	.	.	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A
Query Conservation																				.			.	.	.	.	.	.
Alig confidence																				.			.	.	.	.	.	.																						.
Template Conservation																																																		.
Template Sequence		R	G	E	L	R	V	G	L	E	P	G	Y	L	P	F	E	X	K	D	K	K	G	N	V	I	G	F	D	V	D	L	A	R	E	X	A	K	A	X	G	V	K	L	K	L	V	P	T	.	S	W	D	G	L	I	P	G	L	V	T	E	K	F	D	I	I	I	S	G	X	T	I	S	Q	E	R	N	L	R	V
Template Known Secondary structure			S								T	T	S	T	T	T					T	T	T				S														T									.		G	G	G							T	T	S		S				S	S		B							T	T	S
Template Predicted Secondary structure																																																		.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G
Query Conservation
Alig confidence														.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.														.	.	.
Template Conservation														.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.														.	.	.
Template Sequence		N	F	V	E	P	Y	I	V	V	G	Q	S	.	.	.	.	.	.	L	L	V	K	K	G	L	E	K	G	V	K	S	Y	K	D	L	D	K	P	E	L	T	L	V	T	K	F	G	V	S	.	.	.	.	.	.	.	.	.	A	E	Y	A	A	K	R	L	F	K	N	A	K	.	.	.	L	K	T	Y	D	T
Template Known Secondary structure					S		S							.	.	.	.	.	.					T	T	T	T	T	T			S	G	G	G	G			S	S							T	T	S		.	.	.	.	.	.	.	.	.										S	S	S		.	.	.					S	S
Template Predicted Secondary structure														.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.														.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.							.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.										.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E	K	A
Query Conservation
Alig confidence																																	.	.																								.
Template Conservation																																	.	.																								.
Template Sequence		E	A	E	A	V	Q	E	V	L	N	G	K	A	D	X	F	I	F	D	L	P	F	N	V	A	F	X	A	Q	K	G	.	.	Q	G	Y	L	V	H	L	D	T	S	L	T	Y	E	P	L	G	W	A	I	K	K	G	.	D	P	D	F	L	N	W	L	N	H	F	L	A	Q	I	K	H	D	G	S	Y	D	E
Template Known Secondary structure											S	S	S	S																	T	T	.	.	T	T	T									S										T	T	.																			S
Template Predicted Secondary structure																																	.	.																								.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		263	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Y	E	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions