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Job DescriptionP16682
Confidence98.74%DateThu Jan 5 11:35:27 GMT 2012
Rank72Aligned Residues215
% Identity17%Templatec3k4uA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:binding component of abc transporter; PDBTitle: crystal structure of putative binding component of abc transporter2 from wolinella succinogenes dsm 1740 complexed with lysine
Resolution2.62 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  EKALNFGIISTESQQNLK. PQ. . . . . . WTPFLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRA
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Template Sequence  RGELRVGLEPGYLPFEXKDKKGNVIGFDVDLAREXAKAXGVKLKLVPT. SWDGLIPGLVTEKFDIIISGXTISQERNLRV
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GGGTTS
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   103......110.........120.........130.........140.........150.........160.........170.........180..
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Query Sequence  NGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAG
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Template Sequence  NFVEPYIVVGQS. . . . . . LLVKKGLEKGVKSYKDLDKPELTLVTKFGVS. . . . . . . . . AEYAAKRLFKNAK. . . LKTYDT
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   81........90.. .......100.........110.........120... ......130...... ...140..
 
   183......190.........200.........210.........220.........230.........240.........250.........260..
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Query Sequence  HETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKA
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Template Sequence  EAEAVQEVLNGKADXFIFDLPFNVAFXAQKG. . QGYLVHLDTSLTYEPLGWAIKKG. DPDFLNWLNHFLAQIKHDGSYDE
Template Known Secondary structure  SSSSTT..TTT



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   143......150.........160.........170... ......180.........190...... ...200.........210.........
 
   263...
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Query Sequence  VLER
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Template Sequence  LYER
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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