Job Description P16682 Confidence 99.83% Date Thu Jan 5 11:35:27 GMT 2012 Rank 9 Aligned Residues 219 % Identity 11% Template c3k2dA_ PDB info PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus Resolution 2.60 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	E	Q	E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q
Query Conservation
Alig confidence																				.	.	.	.
Template Conservation																				.	.	.	.
Template Sequence		G	H	M	D	T	S	K	V	K	V	G	V	M	A	G	A	E	A	.	.	.	.	Q	V	A	E	V	A	A	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	T	F	T	D	Y	V	T	P	N	A	A	L	D	D	G	S	I	D	M	N	A	F	Q	H	K	P	Y	L	D	R	Q	V	E	D	R	D	Y
Template Known Secondary structure				S											T	T				.	.	.	.																								S		T	T	S								T	S		S
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.					.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.																			.	.	.	.																			.	.													.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.																			.	.	.	.																			.	.
Template Sequence		K	L	T	I	A	G	N	T	F	V	Y	.	.	.	.	.	.	P	I	A	G	Y	S	K	Q	V	K	S	V	A	A	L	A	D	G	.	.	.	.	V	R	I	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	.	.	L	E	Q	Q	G	L	I	K	L	R	P	E	V	G	L	L	A	T	V	R	D
Template Known Secondary structure													.	.	.	.	.	.							S	S		S		S	T	T			T	T	.	.	.	.								S											.	.				T	T	S					T	T			S	S			G	G	G
Template Predicted Secondary structure													.	.	.	.	.	.																			.	.	.	.																			.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.							.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
								177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																						.	.	.																							.	.
Template Conservation																																													.	.	.																							.	.
Template Sequence		I	V	E	N	P	K	N	I	T	I	M	E	L	D	A	A	Q	L	P	R	S	L	D	D	V	A	L	S	I	I	N	T	T	Y	A	S	S	I	N	L	T	P	E	.	.	.	K	D	G	V	F	V	E	D	K	E	S	P	Y	V	N	L	I	V	A	R	Q	D	.	.	N	V	Q	N	E	N	V	Q	N	F
Template Known Secondary structure						T	T									G	G	G					T	T	T	S	S										G	G	G	T					.	.	.				S					S	S	S	S									T	T	.	.	T	T	T	S
Template Predicted Secondary structure																																													.	.	.																							.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	M	N	Y	G	K	T	P	E	E	K	A	V	L	E	R
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		V	K	A	Y	.	Q	T	E	E	V	Y	T	A	A	K	E
Template Known Secondary structure						.	T	S
Template Predicted Secondary structure						.
Template SS confidence
		245	.	.	.		.	250	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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