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Job DescriptionP16682
Confidence99.80%DateThu Jan 5 11:35:27 GMT 2012
Rank11Aligned Residues279
% Identity9%Templatec3ix1B_
PDB info PDB header:biosynthetic proteinChain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50.........60.........70.........80.........90.........100.........110.
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Query Sequence  ALNFGIISTESQQNLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTV
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Template Sequence  EVMLDWYPNAVHTFL. . . YVAIENGYFAEEGLDVDIVFPTNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASV
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SSSS
GGG...TTTT

SSTTTTS
S
TT

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   34.....40........ .50.........60.........70.........80.........90.........100.........110
 
   112.......120.........130.........140.........150.........160.........170.........180.........190.
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Query Sequence  AADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVA
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Template Sequence  VRSPLNH. . . . VMFLAEQDFDSPADLVGLTVGYP. . . . . GIPVNEPILKTM. . VEAAGGDYEQVHLMDVG. . FELGASIV
Template Known Secondary structure 
S

B
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SSGGGGTTS
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TT..TT

GGG

T..T
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   111...... ..120.........130.........140 .........150.. .......160......... 170.......
 
   192.......200.........210.........220.... .....230.........240.........250.........260........
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Query Sequence  NKQVDVATNNTENLDKLKTSAPEKLKELKVIWK. . SPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERLG.
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Template Sequence  SGRADAVVGTYINHEYPVLKHEGHDISYFNPVDYGVPEYDELVLISNEAYVEESGEVLAAFWRAALKGYEWMVENPDEAL
Template Known Secondary structure  TTS
S
S
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GGGTT




S
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   178.180.........190.........200.........210.........220.........230.........240.........250.......
 
   269270.........280.........290.........300.. .......310.........320......
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Query Sequence  . . WAPFRASSDLQLVPIRQLALFKEMQGVKSNKGLN. . . . EQDKLAKTTEIQAQLDDLDRLNNA
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Template Sequence  NVLLTNQDEANFPLIQEVEEESLSILLEKMENPNGPFGGQDAESWEEVISWLDAHDWLEQPVVA
Template Known Secondary structure  TS
TTTS


S
SSS
TB


TT

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   258.260.........270.........280.........290.........300.........310.........320.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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