Job Description P16682 Confidence 99.73% Date Thu Jan 5 11:35:27 GMT 2012 Rank 20 Aligned Residues 222 % Identity 16% Template c3gxaA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946 Resolution 2.25 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T
Query Conservation
Alig confidence																										.	.	.	.
Template Conservation																										.	.	.	.
Template Sequence		K	E	I	V	F	G	T	T	V	G	D	F	G	D	M	V	K	E	Q	I	Q	P	E	L	.	.	.	.	E	K	K	G	Y	T	V	K	L	V	E	F	T	D	Y	V	R	P	N	L	A	L	A	E	G	E	L	D	I	N	V	F	Q	H	K	P	Y	L	D	D	F	K	K	E	H	N	L	D	I	T	E	V
Template Known Secondary structure										T	T									T						.	.	.	.		T	T	T									S	S	S	S									T	S		S																		T
Template Predicted Secondary structure																										.	.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.																.
Predicted Secondary structure																														.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	.	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D
Query Conservation																														.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.							.	.									.							.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.							.	.																.	.	.	.	.	.
Template Sequence		F	Q	V	P	T	A	P	L	.	.	.	.	G	L	Y	P	G	K	.	.	L	K	S	L	E	E	V	K	D	G	S	T	V	S	A	.	.	.	.	.	.	P	N	D	P	S	N	F	A	R	V	L	V	M	L	D	E	L	G	W	I	K	L	K	D	G	I	N	P	L	T	A	S	K	A	D	I	A	E	N
Template Known Secondary structure						B				.	.	.	.					S	S	.	.				G	G	G			T	T						.	.	.	.	.	.			S														T	T	S	S				T	T			G	G	G			G	G	G
Template Predicted Secondary structure										.	.	.	.							.	.																.	.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.					.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y
Query Conservation
Alig confidence																																									.	.	.	.	.	.																					.
Template Conservation																																									.	.	.	.	.	.																					.
Template Sequence		L	K	N	I	K	I	V	E	L	E	A	A	Q	L	P	R	S	R	A	D	V	D	F	A	V	V	N	G	N	Y	A	I	S	S	G	M	K	L	T	.	.	.	.	.	.	E	A	L	F	Q	E	P	S	F	A	Y	V	N	W	S	A	V	K	T	A	.	D	K	D	S	Q	W	L	K	D	V	T	E	A	Y
Template Known Secondary structure		T	T									G	G	G					T	T	T	S	S												T	T			G	G	.	.	.	.	.	.	G		S							T	T								G	G	.	G	T	T											T
Template Predicted Secondary structure																																									.	.	.	.	.	.																					.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.							.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	T	P	E	E	K	A	V	L	E	R	L	G	W	A	P	F	R	A	S	S
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	N	S	D	A	F	K	A	Y	A	H	K	R	F	E	G	Y	K	S	P	A	A
Template Known Secondary structure		.	T	S											S	T	T		B			T	T
Template Predicted Secondary structure		.
Template SS confidence
			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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