Job Description P16682 Confidence 98.92% Date Thu Jan 5 11:35:27 GMT 2012 Rank 55 Aligned Residues 220 % Identity 9% Template c3g41A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding PDBTitle: the structure of cpn0482, the arginine binding protein from the2 periplasm of chlamydia pneumoniae Resolution 2.10 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.								50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																								.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.
Query Sequence		E	Q	E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	.	.	.	.	.	.	.	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D
Query Conservation																								.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.																							.
Template Conservation																																																					.
Template Sequence		D	R	N	R	I	W	I	V	G	T	N	A	T	Y	P	P	F	E	Y	V	D	A	Q	G	E	V	V	G	F	D	I	D	L	A	K	A	I	S	E	K	L	G	K	Q	L	E	V	R	E	F	A	.	F	D	A	L	I	L	N	L	K	K	H	R	I	D	A	I	L	A	G	M	S	I	T	P	S	R	Q	K
Template Known Secondary structure													S		B	T	T	T	B				T	T	S				S														T										.	G	G	G							T	T	S	S	S				S			B							T
Template Predicted Secondary structure																																																					.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N
Query Conservation
Alig confidence															.	.	.	.	.	.	.																					.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.																					.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	A	L	L	P	Y	Y	G	D	E	V	Q	.	.	.	.	.	.	.	E	L	M	V	V	S	K	R	S	L	E	T	P	V	L	P	L	T	Q	Y	.	.	.	.	S	S	V	A	V	Q	T	G	T	Y	Q	E	H	Y	L	L	S	Q	.	.	.	.	.	.	.	.	.	.	P	G	I	C	V	R	S	F
Template Known Secondary structure		T	S										B		.	.	.	.	.	.	.								T	T			S		S			G	G	G	S	.	.	.	.	S						T	T	S								T	S	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.																					.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.								.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.					.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.											.	.	.	140	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E
Query Conservation
Alig confidence																																																												.
Template Conservation																																																												.
Template Sequence		D	S	T	L	E	V	I	M	E	V	R	Y	G	K	S	P	V	A	V	L	E	P	S	V	G	R	V	V	L	K	D	F	P	N	L	V	A	T	R	L	E	L	P	P	E	C	W	V	L	G	C	G	L	G	V	A	K	D	.	R	P	E	E	I	Q	T	I	Q	Q	A	I	T	D	L	K	S	E	G	V	I
Template Known Secondary structure		S											T	T	S	S	S													G	G	G		T	T										G	G	G		B									T	T	.																		T	T
Template Predicted Secondary structure																																																												.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		261	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	V	L	E	R	L	G	W	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	S	L	T	K	K	W	Q	L	S
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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