Job Description P16682 Confidence 92.26% Date Thu Jan 5 11:35:27 GMT 2012 Rank 142 Aligned Residues 201 % Identity 10% Template c3fd3A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:chromosome replication initiation inhibitor protein; PDBTitle: structure of the c-terminal domains of a lysr family protein from2 agrobacterium tumefaciens str. c58. Resolution 1.70 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q
Query Conservation
Alig confidence										.	.	.	.																														.																							.	.	.	.	.
Template Conservation										.	.	.	.																														.																							.	.	.	.	.
Template Sequence		R	V	T	L	N	I	A	T	.	.	.	.	N	A	D	S	L	G	T	W	F	L	D	A	V	S	K	F	T	G	G	S	D	Y	L	V	N	I	A	V	D	.	D	Q	D	H	T	V	E	W	L	R	G	G	R	V	L	A	A	V	T	A	H	D	.	.	.	.	.	K	P	V	Q	G	C	R	V	T	P	L
Template Known Secondary structure										.	.	.	.						T	T	T											T	S	S									.		S	S								T	T	S		S					S			.	.	.	.	.	S			T	T
Template Predicted Secondary structure										.	.	.	.																														.																							.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170						.	.	.	.	.	.	.	.	.	180	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.							.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	.	.	.	.	.	.	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H
Query Conservation																					.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.									.	.	.	.	.	.													.	.	.	.																.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.																											.	.	.	.																.	.	.	.	.
Template Sequence		G	V	L	R	.	.	.	.	.	.	.	Y	H	A	T	A	S	P	D	F	X	A	R	H	F	A	D	G	V	T	P	A	A	L	A	R	A	.	.	.	.	P	G	L	T	F	N	Q	K	D	R	L	Q	A	S	W	.	.	.	.	.	I	R	T	A	L	G	E	D	V	S	Y	P	T	H	W	L	P	S	T
Template Known Secondary structure						.	.	.	.	.	.	.															T	T		S						T	T	S	.	.	.	.					S	S	T	T								.	.	.	.	.						S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.																											.	.	.	.																.	.	.	.	.
Template SS confidence
		182	.	.	.								.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.					.	.	.	.	.	.	.	.	220	.	.	.	.	.	.						.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E	K	A	V
Query Conservation
Alig confidence														.																		.	.	.	.	.																																				.	.	.	.	.
Template Conservation														.																		.	.	.	.	.																																				.	.	.	.	.
Template Sequence		D	G	F	V	K	A	S	L	A	G	X	G	.	W	G	L	N	P	V	Q	L	V	A	E	H	L	A	A	G	R	.	.	.	.	.	L	V	E	L	X	P	G	T	P	L	D	I	P	L	Y	W	Q	V	N	R	L	A	A	E	R	L	A	G	L	T	A	N	X	V	G	.	.	.	.	.	T	A	R	V	V
Template Known Secondary structure										T	T	S		.	B															T	S	.	.	.	.	.	S			S	S	T	T													T	T	T	T	T	T	T										.	.	.	.	.
Template Predicted Secondary structure														.																		.	.	.	.	.																																				.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.						.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.						310	.	.	.	.
		264	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	X	P	V
Template Known Secondary structure		S	B
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions