Job Description P16682 Confidence 98.76% Date Thu Jan 5 11:35:27 GMT 2012 Rank 71 Aligned Residues 195 % Identity 11% Template c3delC_ PDB info PDB header:protein binding, transport protein Chain: C: PDB Molecule:arginine binding protein; PDBTitle: the structure of ct381, the arginine binding protein from the2 periplasm chlamydia trachomatis Resolution 1.92 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N
Query Conservation
Alig confidence																					.																																										.	.	.	.	.	.	.
Template Conservation																					.																																										.	.	.	.	.	.	.
Template Sequence		L	A	R	E	I	S	N	K	L	G	K	T	L	D	V	R	E	F	S	.	F	D	A	L	I	L	N	L	K	Q	H	R	I	D	A	V	I	T	G	M	S	I	T	P	S	R	L	K	E	I	L	M	I	P	Y	Y	G	E	E	I	K	.	.	.	.	.	.	.	H	L	V	L	V	F	K	G	E	N	K	H
Template Known Secondary structure											T										.	G	G	G							T	T	S	S	S				S	S	B	B							T	T	S											S	.	.	.	.	.	.	.								S			S
Template Predicted Secondary structure																					.																																										.	.	.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.								.	.	.	.	.	.	.	130	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A
Query Conservation
Alig confidence														.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Sequence		P	L	P	L	T	Q	Y	R	S	V	A	V	.	.	.	.	.	.	Q	T	G	T	Y	Q	E	A	Y	L	Q	S	L	.	.	.	.	.	.	.	.	.	S	E	V	H	I	R	S	F	D	S	T	L	E	V	L	M	E	V	M	H	G	K	S	P	V	A	V	L	E	P	S	I	A	Q	V	V	L	K	D	F
Template Known Secondary structure					G	G	G	S	S					.	.	.	.	.	.		T	T	S									S	.	.	.	.	.	.	.	.	.	T	T							S	S										T	T	S	S	S													G	G	G
Template Predicted Secondary structure														.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.							.	.	.	150	.	.	.	.	.	.	.	.	.										160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E	K	A	V	L	E	R	L	G	W	A	P
Query Conservation
Alig confidence																												.
Template Conservation																												.
Template Sequence		P	A	L	S	T	A	T	I	D	L	P	E	D	Q	W	V	L	G	Y	G	I	G	V	A	S	D	.	R	P	A	L	A	L	K	I	E	A	A	V	Q	E	I	R	K	E	G	V	L	A	E	L	E	Q	K	W	G	L	N	N
Template Known Secondary structure		T	T										G	G	G											T	T	.																		T	T										T	G	G	G
Template Predicted Secondary structure																												.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions