Job Description P16682 Confidence 93.88% Date Thu Jan 5 11:35:27 GMT 2012 Rank 139 Aligned Residues 285 % Identity 11% Template c3c9hB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens Resolution 1.90 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.						.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																													.																					.	.	.	.	.
Query SS confidence																																													.																					.	.	.	.	.
Query Sequence		T	L	L	S	P	A	H	A	E	E	Q	E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	.	G	V	K	V	N	A	F	F	A	P	D	Y	A	G	I	I	Q	G	M	R	.	.	.	.	.	F	N	K	V	D	I	A	W	Y	G	N
Query Conservation																																													.																					.	.	.	.	.
Alig confidence																								.	.	.	.	.	.																.																					.	.	.	.	.
Template Conservation																								.	.	.	.	.	.
Template Sequence		A	V	F	P	A	L	S	G	K	T	D	A	Q	T	L	V	V	Y	S	S	L	D	.	.	.	.	.	.	E	P	L	A	T	P	M	I	E	G	F	Q	K	A	N	P	D	I	A	V	H	Y	E	D	M	L	T	G	E	I	Y	D	R	I	V	K	E	T	D	A	G	K	K	T	A	D	F	A	F	S	S	A
Template Known Secondary structure							T	T			T	T										S		.	.	.	.	.	.																T	T																							T	T			B		S					S
Template Predicted Secondary structure																								.	.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.							.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.														.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.							.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.											.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.											.	.	.	.	.	.
Query Sequence		L	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	W	S	V	L	I	V	N	K	D	.	.	.	.	.	S	P	I	N	N	L	N	D	L	L	.	.	.	.	.	.	A	K	R	K	D	L	T	F	G	N
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.											.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.											.	.	.	.	.	.
Template Conservation
Template Sequence		M	D	L	Q	V	K	L	S	N	D	G	Y	A	Q	R	S	D	L	A	M	S	A	R	W	P	A	W	A	N	W	R	N	T	A	Y	A	L	T	F	E	P	A	V	F	V	Y	H	K	P	S	F	T	T	E	K	P	P	A	T	R	A	E	F	V	D	Y	L	E	R	H	A	K	E	V	H	G	R	I	A	T
Template Known Secondary structure											T	T	S							T	T	G	G	G	S		G	G	G			T	T	T					B										G	G	G		S	S	S					S											T					T	T
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.							.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																														.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.
Query Sequence		G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	.	.	.	.	.	.	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I
Query Conservation																														.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.
Template Conservation
Template Sequence		Y	D	I	E	R	S	G	V	G	F	L	F	M	S	R	D	Q	E	Q	F	G	D	I	W	S	V	I	K	A	M	G	A	A	G	V	K	V	Y	S	T	S	S	A	I	L	E	R	V	S	D	G	R	F	V	L	G	Y	N	I	L	G	S	Y	A	A	D	W	A	S	R	H	P	D	V	G	I	V	L	P	K
Template Known Secondary structure				T	T	T																T	T											T	T					S											T	T	S		S															T	T		T	T							S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		W	K	S	P	L	I	P	G	D	P	I	V	W	R	K	N	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	T	P	E	E	K	A	V	L	E	R	L	G	W	A	P	F	R	A	S	S	D	L	Q	L	V	P	I	R	Q	L	A	L	F	K	E	M	Q	G	V	K	S	N	K	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																.	.	.	.											.	.	.																															.	.	.
Template Conservation																																.	.	.	.											.	.	.
Template Sequence		D	Y	T	V	V	M	S	R	I	G	L	V	P	E	A	A	A	N	P	E	L	G	R	R	Y	L	E	F	F	M	.	.	.	.	S	K	E	G	Q	T	I	M	A	R	.	.	.	Q	L	Q	I	P	A	V	S	P	E	V	A	G	E	N	T	A	N	T	M	Q	A	I	H	G	A	Q	L	R	P	V	P	V
Template Known Secondary structure		S													T	T	B	S	S													.	.	.	.	S										.	.	.		S				B			T	T			S	S	S	B									G	G	G						S
Template Predicted Secondary structure																																.	.	.	.											.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.				.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
							300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	G	L	N	E	Q	D	K	L	A	K	T	T	E	I	Q	A	Q
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		S	P	G	L	M	V	Y	L	D	Q	V	K	R	S	R	L	I	E	R	W	N	E
Template Known Secondary structure		T	T	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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