Job Description P16682 Confidence 98.62% Date Thu Jan 5 11:35:27 GMT 2012 Rank 80 Aligned Residues 193 % Identity 17% Template c3b50A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap; PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac. Resolution 1.40 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																															.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	E	K	A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	Y	.	.	.	.	.	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	.	.	.	.	.	.	.	.	.	.
Query Conservation																																															.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Alig confidence																						.																									.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation																						.
Template Sequence		A	D	Y	D	L	K	F	G	M	N	A	G	T	S	S	N	E	Y	K	A	.	A	E	M	F	A	K	E	V	K	E	K	S	Q	G	K	I	E	I	S	L	Y	P	S	S	Q	L	G	D	D	R	A	M	L	K	Q	L	K	D	G	S	L	D	F	T	F	A	E	S	A	R	F	Q	L	F	Y	P	E	A	A
Template Known Secondary structure											S	S		T	T	S						.												T	T	T	S								T	T	T	T													T	S								G	G	G	G	G	G	T	S	G	G	G	G
Template Predicted Secondary structure																						.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
																												94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.																										.	.	.
Template Sequence		V	F	A	L	P	Y	V	I	S	N	Y	N	V	A	Q	K	A	L	F	D	T	E	F	G	K	D	L	I	K	K	M	D	K	D	L	G	V	T	L	L	S	Q	A	Y	.	.	.	.	.	.	.	.	N	G	T	R	Q	T	T	S	N	R	A	I	N	S	I	A	D	M	K	G	L	K	L	R	V	.	.	.
Template Known Secondary structure		G	G	G	S	T	T	T	S		S										S	S																								.	.	.	.	.	.	.	.									S	S				S	G	G	G	G	T	T						.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.																										.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.									.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	D	P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L
Query Conservation
Alig confidence		.	.	.						.	.	.	.	.													.	.	.	.	.	.																																						.	.	.	.
Template Conservation		.	.	.						.	.	.	.	.													.	.	.	.	.	.																																						.	.	.	.
Template Sequence		.	.	.	P	N	A	A	T	.	.	.	.	.	N	L	A	Y	A	K	Y	V	G	A	S	P	.	.	.	.	.	.	T	P	M	A	F	S	E	V	Y	L	A	L	Q	T	N	A	V	D	G	Q	E	N	P	L	A	A	V	Q	A	Q	K	F	Y	E	V	Q	K	.	.	.	.	F	L	A	M	T	N	H	I
Template Known Secondary structure		.	.	.		S				.	.	.	.	.								T	T				.	.	.	.	.	.					G	G	G							T	T	S	S	S												T	T	G	G	G	S		S	.	.	.	.
Template Predicted Secondary structure		.	.	.						.	.	.	.	.													.	.	.	.	.	.																																						.	.	.	.
Template SS confidence
					149	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.	.							.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210
		228	.	230	.	.	.	.	.	.	.					.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure												.	.	.	.
Query SS confidence												.	.	.	.
Query Sequence		I	P	G	D	P	I	V	W	R	K	.	.	.	.	N	L	S	E	T	T	K	D	K	I	Y	D	F	F
Query Conservation												.	.	.	.
Alig confidence												.	.	.	.
Template Conservation
Template Sequence		L	N	D	Q	L	Y	L	V	S	N	E	T	Y	K	E	L	P	E	D	L	Q	K	V	V	K	D	A	A
Template Known Secondary structure															T	T	S
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions