Job Description P16682 Confidence 98.85% Date Thu Jan 5 11:35:27 GMT 2012 Rank 64 Aligned Residues 258 % Identity 16% Template c2zzxD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:abc transporter, solute-binding protein; PDBTitle: crystal structure of a periplasmic substrate binding protein in2 complex with lactate Resolution 1.75 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.						.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																											.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	N	F	G	I	I	S	T	E	S	Q	Q	N	L	K	P	Q	W	T	P	F	L	Q	D	M	E	K	K	L	G	V	K	V	N	A	F	F	A	P	D	.	.	.	.	.	Y	A	G	I	I	Q	G	M	R	F	N	K	V	D	I	A	W	Y	G	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																											.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																												.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		R	W	R	I	Q	T	A	W	D	A	G	T	V	.	G	Y	S	L	F	Q	K	F	T	E	R	V	K	E	L	T	D	G	Q	L	E	V	Q	P	F	P	A	G	A	V	V	G	T	F	D	M	F	D	A	V	K	T	G	V	L	D	G	M	N	P	F	T	L	Y	W	A	G	R	M	P	V	T	A	F	L	S
Template Known Secondary structure								S	S		T	T	S		.																T	T	T	S								T	T	S	S	S		G	G	G								T	S	S	S					B	G	G	G	G	T	T	T		G	G	G	G	G	S	S
Template Predicted Secondary structure															.
Template SS confidence
		3035	.	.	.	.	3040	.	.	.	.	.	.	.		.	.	3050	.	.	.	.	.	.	.	.	.	3060	.	.	.	.	.	.	.	.	.	3070	.	.	.	.	.	.	.	.	.	3080	.	.	.	.	.	.	.	.	.	3090	.	.	.	.	.	.	.	.	.	3100	.	.	.	.	.	.	.	.	.	3110	.	.	.
																									94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	M	E	A	V	D	R	A	N	G	Q	V	F	A	Q	T	V	A	A	D	G	S	P	G	Y	W	S	V	L	I	V	N	K	D	S	P	I	N	N	L	N	D	L	L	A	K	R	K	D	L	T	F	G	N	G	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.					.	.																	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.					.	.																	.	.	.	.	.	.
Template Sequence		S	Y	A	L	G	L	D	R	P	D	Q	W	E	T	W	F	Y	S	L	G	G	L	D	I	A	R	R	A	F	A	E	Q	G	L	F	Y	V	G	P	V	Q	H	D	L	N	I	.	.	.	.	.	.	I	H	S	K	.	.	K	P	I	R	R	F	E	D	F	K	G	V	K	L	R	V	.	.	.	.	.	.
Template Known Secondary structure				T	T	S			S										T	S	S											T	T	T														.	.	.	.	.	.				S	.	.	S				S	G	G	G	G	T	T						.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.					.	.																	.	.	.	.	.	.
Template SS confidence
		3114	.	.	.	.	.	3120	.	.	.	.	.	.	.	.	.	3130	.	.	.	.	.	.	.	.	.	3140	.	.	.	.	.	.	.	.	.	3150	.	.	.	.	.	.	.	.	.							3160	.	.	.			.	.	.	.	.	.	3170	.	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		P	N	S	T	S	G	F	L	V	P	G	Y	Y	V	F	A	K	N	N	I	S	A	S	D	F	K	R	T	V	N	A	G	H	E	T	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	N	N	T	E	N	L	D	K	L	K	T	S	A	P	E	K	L	K	E	L	K	V	I	W	K	S	P	L	I	.	.
Query Conservation																																																																																.	.
Alig confidence											.	.	.	.	.	.								.	.	.	.	.	.																															.	.	.	.																	.	.
Template Conservation											.	.	.	.	.	.								.	.	.	.	.	.																															.	.	.	.
Template Sequence		P	G	G	M	I	A	E	V	F	.	.	.	.	.	.	A	A	A	G	A	S	T	.	.	.	.	.	.	V	L	L	P	G	G	E	V	Y	P	A	L	E	R	G	V	I	D	A	A	D	F	V	G	P	A	V	N	Y	N	.	.	.	.	L	G	F	H	Q	V	A	K	Y	I	I	M	G	P	P	E	T	P
Template Known Secondary structure			S								.	.	.	.	.	.			T	T				.	.	.	.	.	.					G	G	G							T	T	S		S					S								.	.	.	.	T	T													T	T	S	S
Template Predicted Secondary structure											.	.	.	.	.	.								.	.	.	.	.	.																															.	.	.	.
Template SS confidence
		3180	.	.	.	.	.	.	.	.							.	3190	.	.	.	.	.							.	.	.	.	3200	.	.	.	.	.	.	.	.	.	3210	.	.	.	.	.	.	.	.	.	3220	.	.	.	.	.					.	.	.	.	3230	.	.	.	.	.	.	.	.	.	3240	.	.	.
								229	230	.	.	.	.	.	.	.	.					.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.										.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.											.	.	.	.																			.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.											.	.	.	.																			.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	P	G	D	P	I	V	W	R	K	N	.	.	.	.	L	S	E	T	T	K	D	K	I	Y	D	F	F	M	N	Y	G	K	.	.	.	.	.	.	.	.	.	T	P	E	E	K	A	V	L	E	R	L	G	W	A	P	F	R	A	S	S	D	L	Q	L	V	P	I	R	Q	L	A	L	F
Query Conservation		.	.	.	.	.	.											.	.	.	.																			.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.											.	.	.	.																			.	.	.	.	.	.	.	.	.															.
Template Conservation																																																															.
Template Sequence		A	I	H	Q	P	V	D	L	M	D	F	T	I	N	L	N	R	W	R	S	L	P	K	P	L	Q	E	R	F	I	A	A	V	H	E	Y	S	W	I	H	Y	A	G	I	Q	K	A	N	L	E	A	W	P	K	Y	R	Q	A	G	V	E	.	V	I	R	L	S	N	E	D	V	R	K	F	R	R	L	A	I	P
Template Known Secondary structure			S	S		S	S															S																																					T	T			.
Template Predicted Secondary structure																																																															.
Template SS confidence
		3244	.	.	.	.	.	3250	.	.	.	.	.	.	.	.	.	3260	.	.	.	.	.	.	.	.	.	3270	.	.	.	.	.	.	.	.	.	3280	.	.	.	.	.	.	.	.	.	3290	.	.	.	.	.	.	.	.	.	3300	.	.	.	.		.	.	.	.	.	3310	.	.	.	.	.	.	.	.	.	3320	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	M	Q	G	V	K	S	N	K	G	L	N	E	Q	D	K	L	A	K	T	T	E	I	Q	A	Q	L	D	D	L	D	R	L
Query Conservation
Alig confidence														.	.
Template Conservation														.	.
Template Sequence		I	W	F	K	W	A	K	M	D	K	Y	S	.	.	R	E	A	F	A	S	Q	L	E	Y	M	K	G	I	G	Y	V	T	D	E
Template Known Secondary structure								T	T	S				.	.														T	T	S	S		T	T
Template Predicted Secondary structure														.	.
Template SS confidence
		3323	.	.	.	.	.	.	3330	.	.	.	.			.	.	.	.	.	3340	.	.	.	.	.	.	.	.	.	3350	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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