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Job DescriptionP16682
Confidence98.76%DateThu Jan 5 11:35:27 GMT 2012
Rank70Aligned Residues190
% Identity15%Templatec2ylnA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the l-cystine solute receptor of2 neisseria gonorrhoeae in the closed conformation
Resolution1.12 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   53......60.........70.........80.........90.........100.........110.........120.........130..
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Query Sequence  FLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPIN
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Template Sequence  VTRAVAEKLGVKVEFKETQ. WDSMMAGLKAGRFDVVANQVGLTSPERQATFDKSEPYSWSG. . . . . . . AVLVAHNDSNIK
Template Known Secondary structure  T


.GGGTS
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   78.80.........90...... ...100.........110.........120.........130....... ..140.........
 
   133......140.........150.........160.........170.........180.........190.........200.........210..
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Query Sequence  NLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTENLDKLKTSA
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Template Sequence  SIADIKGV. . . . KTAQSLTSNYGEKAKAA. . . . . . . . . . . . GAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKN
Template Known Secondary structure  SGGG
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TTST............T

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   150....... ..160.........170.... .....180.........190.........200.........210...
 
   213......220.........230.........240.........250.........260.......
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Query Sequence  PEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERL
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Template Sequence  PNAGVKIVWSAPADEKVGSGLIVNKG. NDEAVAKFSTAINELKADGTLKKLGEQF
Template Known Secondary structure  TTSS

GGG


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   214.....220.........230......... 240.........250.........260.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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